G579525 (LOC106575364)


Basic Information

Item Value
gene id G579525
gene name LOC106575364
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 16735674 ~ 16736058 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU661245
TCCTTGTCTCTGAGCTGTCTCTGgaactcctccagctcctccgccATCACCTTCTCCATTCTCCGCATGGTTctgtccatctcctcctctctccttctgccctcctccctctccctcactccctgggCCTGCACCTCCTCCAGGTTACACAGGTTCTGTCTCAGACACAGCAACTCAGACGCTACCTCGGTTTTCTCCCTCTCCGTTtgctctatcctcttctccctctcctcaacCTCCTGCCTCGCTGTCTCCGCCTCCTTCTGGACTCTGTGCATCTCTTTCTGAGCGGTGTCGAGCTCCAGGGTTTTCTGACCTAGGAGGGCAGTGGTGGTTTTGTGCCTGGATTTAGTTTCTTCCAGCAGGGCTAGAAGCTGGTCACGAT

Function

NR:

description
pericentrin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU661245 True 385 lncRNA 0.56 1 16735674 16736058

Neighbor

gene id symbol gene type direction distance location
LOC110528893 LOC105019901 coding upstream 44602 16683082 ~ 16691072 (+)
LOC118965266 NA coding upstream 47429 16683341 ~ 16688245 (+)
LOC110528869 LOC106574522 coding upstream 64101 16663674 ~ 16671573 (+)
LOC110528883 ola1 coding upstream 72625 16655086 ~ 16663049 (+)
LOC110528859 LOC106575376 coding upstream 176380 16544860 ~ 16559294 (+)
LOC110528788 NA coding downstream 11357 16747415 ~ 16763145 (+)
LOC110528796 LOC106574532 coding downstream 170641 16906699 ~ 16920069 (+)
trnak-uuu NA coding downstream 189612 16925670 ~ 16925742 (+)
trnak-uuu-2 NA coding downstream 191158 16927216 ~ 16927288 (+)
trnak-cuu NA coding downstream 194209 16930267 ~ 16930339 (+)
G579509 LOC106574571 non-coding upstream 21706 16712941 ~ 16713968 (+)
G579404 LOC106574525 non-coding upstream 27470 16707276 ~ 16708204 (+)
G579400 LOC106574524 non-coding upstream 35843 16699589 ~ 16699831 (+)
G579389 NA non-coding upstream 43671 16691288 ~ 16692003 (+)
G579526 LOC106575364 non-coding downstream 835 16736893 ~ 16737230 (+)
G579527 LOC106575364 non-coding downstream 1312 16737370 ~ 16738150 (+)
G579530 NA non-coding downstream 5900 16741958 ~ 16742196 (+)
G579531 NA non-coding downstream 6301 16742359 ~ 16742742 (+)
G579510 NA non-coding downstream 27393 16763451 ~ 16764608 (+)
LOC110528786 omp-1 other upstream 271982 16457220 ~ 16463699 (+)
LOC110528915 LOC106574584 other upstream 687667 16046065 ~ 16048048 (+)
LOC110528906 LOC106574480 other upstream 730681 15993464 ~ 16004993 (+)
LOC110528902 atr other upstream 1237088 15492870 ~ 15498827 (+)
G578389 NA other upstream 1271309 15462245 ~ 15464365 (+)
G579566 NA other downstream 82484 16818542 ~ 16819890 (+)
LOC110527403 LOC106574539 other downstream 306351 17042409 ~ 17097924 (+)
si:ch211-181l5.2 cl10a other downstream 597666 17333699 ~ 17336419 (+)
G580179 NA other downstream 662735 17398793 ~ 17400533 (+)
G580315 LOC106575303 other downstream 934217 17670275 ~ 17680668 (+)

Expression


Co-expression Network