XLOC_025195 (lrrc3cb)


Basic Information

Item Value
gene id XLOC_025195
gene name lrrc3cb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 16771797 ~ 16774074 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049752
AAATCAAATGCTCCTCTGCGGTAAAGTTGGTTTCCACTACTACAGGGATTAACTTGGACTcgtttaatttgtgtttaatggCGATCTTGGATTCGTTGTTTCGGTGGTGAAGAGACGTCGCATACCGGCGGTTCGAGCATACTAAATAAACGACAAATAATCATCAATGAAAAGTTAGAAGGCAATAGGCGCAACACGGCAAATACAGCGTGCTTATGCGGTAAAAACCACAACAACAGTCCTTACGGGATTTCTCATCTGTTCTGTCAGCTTGATGTTCGGGCCCGATCTGCTTCCTCTGGGAGGGCATGATGGGCTGCCATCCCATGGCCAGCTGCCTTTCTCTCACTCTCACCCTTTTTTTGTATCAactggatgtgtgtgtgtctgactccCACCACGAAGAATGCCCTGAGAGCTGTTTCTGCACTGAGGGTATCAACAGTGGCCTGGTGGTTCACTGCAGCTCCATGCACTTAACTGCAGTGCCACGTGACCTTCCCAACACCACACAGCATCTATACCTAGACAACAATTTGCTGCTCACCATACCGTCCGATGCATTCAAAGGGCTCCCGCTGCTGTTCAAACTGGATCTTTCCCACAACCGGTTGGTCGGTTTGGAGCATGGAGCCTTTCGAGACCTTGCAGACTCTCTGCGCAGCCTGGATCTTTCCTCTAATCTACTGGAGACACTGGACCCCGGGGCGTTCGGCGACCTCAGAGCGCAGACTAACCTCTCTCAAAACCGCTGGCTGTGTGACTGCCGCCTGCAGCTGGCAATGCCACAGCTGCTGCTGGATCCGTCGTCTCTTGCTGAGGTTATGTGCAATTCTTCTGAACCCCAAGAGCTGGGGGCTCAGGGTTTGCCCTTCATCCTGGTGGCGACTGATTTGGATTTTTGTGCAACCATCAGGAGG

Function

symbol description
lrrc3cb Predicted to be active in extracellular matrix and extracellular space. Orthologous to human LRRC3C (leucine rich repeat containing 3C).

GO:

id name namespace
GO:0031012 extracellular matrix cellular_component
GO:0005615 extracellular space cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-080327-11 Predicted to be active in extracellular matrix and extracellular space. Orthologous to human LRRC3C (leucine rich repeat containing 3C).

Ensembl:

ensembl_id ENSDARG00000076186

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049752 True 920 mRNA 0.51 2 16771797 16774074

Neighbor

gene id symbol gene type direction distance location
XLOC_025194 tmem86b coding upstream 1479 16762483 ~ 16770318 (+)
XLOC_025193 gys1 coding upstream 21761 16722014 ~ 16750036 (+)
XLOC_025192 zgc:55558 coding upstream 88174 16662209 ~ 16683623 (+)
XLOC_025191 slc17a7a coding upstream 117709 16612574 ~ 16654088 (+)
XLOC_025190 slc6a16a coding upstream 180149 16566361 ~ 16591648 (+)
XLOC_025196 stk17al coding downstream 67868 16841942 ~ 16872909 (+)
XLOC_025197 BX470185.1 coding downstream 100327 16874401 ~ 16883304 (+)
XLOC_025198 atp6v0a1a coding downstream 148152 16922226 ~ 16973125 (+)
XLOC_025199 cavin1a coding downstream 202021 16976095 ~ 17012340 (+)
XLOC_025200 stat3 coding downstream 256591 17030665 ~ 17107445 (+)
XLOC_025429 BX649540.1 misc downstream 13474665 30248739 ~ 30249036 (+)
XLOC_025188 CR388224.1 non-coding upstream 398670 16373012 ~ 16373127 (+)
XLOC_025185 NA non-coding upstream 530457 16186593 ~ 16241340 (+)
XLOC_025184 NA non-coding upstream 610338 16153224 ~ 16161459 (+)
XLOC_025183 CR387933.1 non-coding upstream 716065 16055009 ~ 16055732 (+)
XLOC_025180 NA non-coding upstream 905395 15865921 ~ 15866402 (+)
XLOC_025203 CU207238.1 non-coding downstream 621165 17395239 ~ 17461885 (+)
XLOC_025215 NA non-coding downstream 1266539 18040613 ~ 18061783 (+)
XLOC_025218 NA non-coding downstream 1415535 18189609 ~ 18197126 (+)
XLOC_025227 NA non-coding downstream 1896750 18670824 ~ 18672291 (+)

Expression


Co-expression Network