G579530


Basic Information

Item Value
gene id G579530
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 16741958 ~ 16742196 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU661250
TCATTGTTACACATGTCGTCCTGCTGTGTGGCGCTGCCGTCTGTCTGGAGGTCCATCCCTAGGGGGCGACCTTGCGCTGGGCCGTCATTCTGCGTTGGAGACGGGCCCTTCCTCTTCTGCGTCTTTTTCTGCGCGACTTGACCGTCCCCTTTCGCCCTTTTCTGTCGGAAGCTAGCAAGCTACGCAGgaaggacagggagaggtagagggacacGTACGTCAGGAGGGCtgaacaccac

Function

NR:

description
A-kinase anchor protein 9-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU661250 True 239 lncRNA 0.59 1 16741958 16742196

Neighbor

gene id symbol gene type direction distance location
LOC110528893 LOC105019901 coding upstream 50886 16683082 ~ 16691072 (+)
LOC118965266 NA coding upstream 53713 16683341 ~ 16688245 (+)
LOC110528869 LOC106574522 coding upstream 70385 16663674 ~ 16671573 (+)
LOC110528883 ola1 coding upstream 78909 16655086 ~ 16663049 (+)
LOC110528859 LOC106575376 coding upstream 182664 16544860 ~ 16559294 (+)
LOC110528788 NA coding downstream 5219 16747415 ~ 16763145 (+)
LOC110528796 LOC106574532 coding downstream 164503 16906699 ~ 16920069 (+)
trnak-uuu NA coding downstream 183474 16925670 ~ 16925742 (+)
trnak-uuu-2 NA coding downstream 185020 16927216 ~ 16927288 (+)
trnak-cuu NA coding downstream 188071 16930267 ~ 16930339 (+)
G579527 LOC106575364 non-coding upstream 3808 16737370 ~ 16738150 (+)
G579526 LOC106575364 non-coding upstream 4728 16736893 ~ 16737230 (+)
G579525 LOC106575364 non-coding upstream 5900 16735674 ~ 16736058 (+)
G579509 LOC106574571 non-coding upstream 27990 16712941 ~ 16713968 (+)
G579404 LOC106574525 non-coding upstream 33754 16707276 ~ 16708204 (+)
G579531 NA non-coding downstream 163 16742359 ~ 16742742 (+)
G579510 NA non-coding downstream 21255 16763451 ~ 16764608 (+)
G579553 NA non-coding downstream 53123 16795319 ~ 16795544 (+)
G579507 NA non-coding downstream 57220 16799416 ~ 16800614 (+)
G579556 NA non-coding downstream 59587 16801783 ~ 16803359 (+)
LOC110528786 omp-1 other upstream 278266 16457220 ~ 16463699 (+)
LOC110528915 LOC106574584 other upstream 693951 16046065 ~ 16048048 (+)
LOC110528906 LOC106574480 other upstream 736965 15993464 ~ 16004993 (+)
LOC110528902 atr other upstream 1243372 15492870 ~ 15498827 (+)
G578389 NA other upstream 1277593 15462245 ~ 15464365 (+)
G579566 NA other downstream 76346 16818542 ~ 16819890 (+)
LOC110527403 LOC106574539 other downstream 300213 17042409 ~ 17097924 (+)
si:ch211-181l5.2 cl10a other downstream 591528 17333699 ~ 17336419 (+)
G580179 NA other downstream 656597 17398793 ~ 17400533 (+)
G580315 LOC106575303 other downstream 928079 17670275 ~ 17680668 (+)

Expression


Co-expression Network