G579531


Basic Information

Item Value
gene id G579531
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 16742359 ~ 16742742 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU661251
GGGGTGAAGGTTTTCATCCGCCCAATGAGCAAGAACAAGAGTTTGATTCAGATAATCTTCCCAGCACTCAGGTAACATTCCTGATTGAACCAGCAGAGAGAATGAAAGCCCCAGCACACAGGTAACATCCCTGATTGAACCAGCAGAGAATGAAAGCCACAGCACATTGCCAGTCCAAAGCAGTCAACCAGCCACAGTCTCCACTTAGTCCTAACAGTCAACCTCCCAGCATCGCTCCATAGATCTCCCAAAACCACTATCACTGGACAACAAGGTTCCCAACAGAGCGATCAGaaaaacattacattttaaaGTCCAAGTGTACTGATTTAGTCAGTGTAATTGTGCATCCAATCTCACTTTGCATCTCTTTCAGcatcccgg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU661251 True 384 lncRNA 0.46 1 16742359 16742742

Neighbor

gene id symbol gene type direction distance location
LOC110528893 LOC105019901 coding upstream 51287 16683082 ~ 16691072 (+)
LOC118965266 NA coding upstream 54114 16683341 ~ 16688245 (+)
LOC110528869 LOC106574522 coding upstream 70786 16663674 ~ 16671573 (+)
LOC110528883 ola1 coding upstream 79310 16655086 ~ 16663049 (+)
LOC110528859 LOC106575376 coding upstream 183065 16544860 ~ 16559294 (+)
LOC110528788 NA coding downstream 4673 16747415 ~ 16763145 (+)
LOC110528796 LOC106574532 coding downstream 163957 16906699 ~ 16920069 (+)
trnak-uuu NA coding downstream 182928 16925670 ~ 16925742 (+)
trnak-uuu-2 NA coding downstream 184474 16927216 ~ 16927288 (+)
trnak-cuu NA coding downstream 187525 16930267 ~ 16930339 (+)
G579530 NA non-coding upstream 163 16741958 ~ 16742196 (+)
G579527 LOC106575364 non-coding upstream 4209 16737370 ~ 16738150 (+)
G579526 LOC106575364 non-coding upstream 5129 16736893 ~ 16737230 (+)
G579525 LOC106575364 non-coding upstream 6301 16735674 ~ 16736058 (+)
G579509 LOC106574571 non-coding upstream 28391 16712941 ~ 16713968 (+)
G579510 NA non-coding downstream 20709 16763451 ~ 16764608 (+)
G579553 NA non-coding downstream 52577 16795319 ~ 16795544 (+)
G579507 NA non-coding downstream 56674 16799416 ~ 16800614 (+)
G579556 NA non-coding downstream 59041 16801783 ~ 16803359 (+)
G579566 NA non-coding downstream 75800 16818542 ~ 16819890 (+)
LOC110528786 omp-1 other upstream 278667 16457220 ~ 16463699 (+)
LOC110528915 LOC106574584 other upstream 694352 16046065 ~ 16048048 (+)
LOC110528906 LOC106574480 other upstream 737366 15993464 ~ 16004993 (+)
LOC110528902 atr other upstream 1243773 15492870 ~ 15498827 (+)
G578389 NA other upstream 1277994 15462245 ~ 15464365 (+)
LOC110527403 LOC106574539 other downstream 299667 17042409 ~ 17097924 (+)
si:ch211-181l5.2 cl10a other downstream 590982 17333699 ~ 17336419 (+)
G580179 NA other downstream 656051 17398793 ~ 17400533 (+)
G580315 LOC106575303 other downstream 927533 17670275 ~ 17680668 (+)

Expression


Co-expression Network