G579507


Basic Information

Item Value
gene id G579507
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 16799416 ~ 16800614 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU661226
AGGCAGCAGGTAGGAGGGCAAGGTGTCTGATTGGCTACTGTGCTGACCTGACGTTCGCAGTAGGCCTTCATCAGTTTGCTGAGCGGAGTGTGCCTCTTGATTTTGAACTGAACCACAGAGCCGTCCTGACCGGCTACCTTTAAGTTAATGTGGTCGTTCTCAGTCTTCACGCCctcCTTTGGTTTCTCCTCCGACATTTTGATGGGTTTTCTTTAAAGGATTTGCTGGTTAAAATGCAATTTTGGCTGTGTTTTCGTTTGCACTTCTTTAAGCTATATGCTCTTCTCCTCCGCAAACACGGG

Function

NR:

description
PREDICTED: small ubiquitin-related modifier 3 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU661226 True 302 lncRNA 0.48 2 16799416 16800614

Neighbor

gene id symbol gene type direction distance location
LOC110528788 NA coding upstream 36271 16747415 ~ 16763145 (+)
LOC110528893 LOC105019901 coding upstream 108344 16683082 ~ 16691072 (+)
LOC118965266 NA coding upstream 111171 16683341 ~ 16688245 (+)
LOC110528869 LOC106574522 coding upstream 127843 16663674 ~ 16671573 (+)
LOC110528883 ola1 coding upstream 136367 16655086 ~ 16663049 (+)
LOC110528796 LOC106574532 coding downstream 106085 16906699 ~ 16920069 (+)
trnak-uuu NA coding downstream 125056 16925670 ~ 16925742 (+)
trnak-uuu-2 NA coding downstream 126602 16927216 ~ 16927288 (+)
trnak-cuu NA coding downstream 129653 16930267 ~ 16930339 (+)
trnan-guu-2 NA coding downstream 130410 16931024 ~ 16931097 (+)
G579553 NA non-coding upstream 3872 16795319 ~ 16795544 (+)
G579510 NA non-coding upstream 34808 16763451 ~ 16764608 (+)
G579531 NA non-coding upstream 56674 16742359 ~ 16742742 (+)
G579530 NA non-coding upstream 57220 16741958 ~ 16742196 (+)
G579527 LOC106575364 non-coding upstream 61266 16737370 ~ 16738150 (+)
G579556 NA non-coding downstream 1169 16801783 ~ 16803359 (+)
G579566 NA non-coding downstream 17928 16818542 ~ 16819890 (+)
G579567 NA non-coding downstream 25848 16826462 ~ 16827211 (+)
G579571 NA non-coding downstream 27225 16827839 ~ 16828043 (+)
G579574 LOC106574531 non-coding downstream 29203 16829817 ~ 16830514 (+)
LOC110528786 omp-1 other upstream 335724 16457220 ~ 16463699 (+)
LOC110528915 LOC106574584 other upstream 751409 16046065 ~ 16048048 (+)
LOC110528906 LOC106574480 other upstream 794423 15993464 ~ 16004993 (+)
LOC110528902 atr other upstream 1300830 15492870 ~ 15498827 (+)
G578389 NA other upstream 1335051 15462245 ~ 15464365 (+)
LOC110527403 LOC106574539 other downstream 241795 17042409 ~ 17097924 (+)
si:ch211-181l5.2 cl10a other downstream 533110 17333699 ~ 17336419 (+)
G580179 NA other downstream 598179 17398793 ~ 17400533 (+)
G580315 LOC106575303 other downstream 869661 17670275 ~ 17680668 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_00031137_00033754 SUMO3, SUMO2 coding CI01000340 null 30780 ~ 33754 (-)