G579556


Basic Information

Item Value
gene id G579556
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 16801783 ~ 16803359 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU661280
AGTTTTATTTGAATAAAAATAGATTTGTTCAATCAACAGACAAAGGGTAGTTTATTACACAACTAGACATTAATAAAACGTTGATTCATTTGGCCTGACAATATTCTAACTGAAGTAGCTGGTGTCTGTAATGAGAAAGCTGTCACCGGTAGAAAAATATTACTTAGATCTGACATTCTTTGTCATTTTACAAGGTGTATACATTCTATATGGTAGggtacatttctatctgcaattcTGAGCATTCAACTCTTCTGAATAGCCTCCTAttaaaagctgcaatatgtaactttttgggcgacctgaccaaattcacataaatgtgagttatagatctgtgaCTCTTTGAAAACAAGTTTAAGAAGCAGATCTATGCTTAccatatggaaaatatatttcacagctgtttagatggtacaatgactctctaaactatacttgcttgttttgtcgcAAACTGAAATAAGGTGAACTATTAATATTTTAGCAAGCAGGAAATGGCGGagggatttctgcatagtgcTTCATTAAGTACAATTCTGGTTAAAATTAGAAAAACAATACATCTATACAAGTTTATTGTTTGATGGAGTACAGGTGTGCGTGCACTGGACACATTTCTGATAGTTCACCATCAGATAAATATACATAGAAAAAGGTCAACATAGATAAGGTCATCTTCTCATTCAAGTAGAGCATAGGCAAGATCTCCTACAACCAAGTAGTAACCCTCAAGTACCATCATCTGtttataatacagtagtagtcACAGAAGGTATATAAGGTACATTTAAGGCTACTGCACCTGTCCACTGCCCTCACATAGTCTGCACTGCAAGACATGTTCTGTACTGCACCACTCACCAAGCAGCGCAGAACTTGTTCTAGCTAAGTATTCGTAGAAGACTTCATTACATTCAACATTTAATGACCTGTGTTTACATGGGAAGATAATGTTGTATATCAGGCTGTCCCAAAACTTTGATCTAAGGCCAGTTTCATGTATTCTCCTCAAAACGGTTAAAGATATTGAACGGGATCTTAAGCACTTACAaaatcgtaacatattgtacaaattggaattcgtTACATCATACGAATTgcaggaaatatatattttttgcaggACATAACATACGAAGTAAGTGATGTTGTGCACAATTTTTGGTGACTCGTTTTGGCTTGTGAGCACTACTTTCAAAACTACGGTCTGAAATTATACAAATCCTTTAAAAACACCTCTAAGACTTATGATTAATGGtttaggggaggggggggggttggttgaAAGGTCAGAAGTAAAGAGAAGGCAGGCGATAGTACAGTGTCCAAATATCAGCTCAGGAGAATTTGGAGTATGGGTTGGACCCACTGAGACCtggaagaaagagagcgagagagcaggagTTAGAGATCATCTTTCATTTTAAATTCCATCAGAGTAGTAATGGTGCTTTTCCACAGACAGGAATGGGGAAACATGACAGAAgtggcgtgtgtgtttg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU661280 True 1505 lncRNA 0.37 2 16801783 16803359

Neighbor

gene id symbol gene type direction distance location
LOC110528788 NA coding upstream 38638 16747415 ~ 16763145 (+)
LOC110528893 LOC105019901 coding upstream 110711 16683082 ~ 16691072 (+)
LOC118965266 NA coding upstream 113538 16683341 ~ 16688245 (+)
LOC110528869 LOC106574522 coding upstream 130210 16663674 ~ 16671573 (+)
LOC110528883 ola1 coding upstream 138734 16655086 ~ 16663049 (+)
LOC110528796 LOC106574532 coding downstream 103340 16906699 ~ 16920069 (+)
trnak-uuu NA coding downstream 122311 16925670 ~ 16925742 (+)
trnak-uuu-2 NA coding downstream 123857 16927216 ~ 16927288 (+)
trnak-cuu NA coding downstream 126908 16930267 ~ 16930339 (+)
trnan-guu-2 NA coding downstream 127665 16931024 ~ 16931097 (+)
G579507 NA non-coding upstream 1169 16799416 ~ 16800614 (+)
G579553 NA non-coding upstream 6239 16795319 ~ 16795544 (+)
G579510 NA non-coding upstream 37175 16763451 ~ 16764608 (+)
G579531 NA non-coding upstream 59041 16742359 ~ 16742742 (+)
G579530 NA non-coding upstream 59587 16741958 ~ 16742196 (+)
G579566 NA non-coding downstream 15183 16818542 ~ 16819890 (+)
G579567 NA non-coding downstream 23103 16826462 ~ 16827211 (+)
G579571 NA non-coding downstream 24480 16827839 ~ 16828043 (+)
G579574 LOC106574531 non-coding downstream 26458 16829817 ~ 16830514 (+)
G579575 NA non-coding downstream 28567 16831926 ~ 16832209 (+)
LOC110528786 omp-1 other upstream 338091 16457220 ~ 16463699 (+)
LOC110528915 LOC106574584 other upstream 753776 16046065 ~ 16048048 (+)
LOC110528906 LOC106574480 other upstream 796790 15993464 ~ 16004993 (+)
LOC110528902 atr other upstream 1303197 15492870 ~ 15498827 (+)
G578389 NA other upstream 1337418 15462245 ~ 15464365 (+)
LOC110527403 LOC106574539 other downstream 239050 17042409 ~ 17097924 (+)
si:ch211-181l5.2 cl10a other downstream 530365 17333699 ~ 17336419 (+)
G580179 NA other downstream 595434 17398793 ~ 17400533 (+)
G580315 LOC106575303 other downstream 866916 17670275 ~ 17680668 (+)

Expression


Co-expression Network