G579566


Basic Information

Item Value
gene id G579566
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 16818542 ~ 16819890 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU661296
cctgtctctctgtgcaCTCGTTCCTCAGGTTGAAAGACAGAGCAGAGGGAGTTGAGGACGAGGGTTCCCATCTTGGAGGAGTTTCGCTCAGAGCTCTTGTAGTAATCCAGGGAGTTATGGGTTAACACGAACCAGCGTTTCTTCAGCTTCAGAACATTACTCTTAGTTCCTGTCTTCATCTCCTTCTGGAGCCAACCTtggggtaggagggagagagaggggagagagagagagagagagaaaggagaatgatacagagagagggagaggagagagagagagagagagagagagagagagagaggagagatagagagagagagggagggagagagcgagagagagagagggagagagggagataggagagagatagagagagggagatgggagagagatagagagagggagagagagagagagggagagagggacagagagagagagagagagatgaggggagataggagagagagagagagagagagagagagagagagagagagggagagagggagggagggagagacaataaCTGTGTGGTTGAGTTGTGTACCAGTGTGGGTGTGTAATGAGTAACATTTCCTGAAGACTAACACGTTGCACAGACCTATGTTccaacacacacacgtgtgtgtatttgagtgtgtctctgtgcgtgtctctatgtgtgtctctgtgtgtgtctctatgtgtgtctctatgtgtgtctctgtgtgtgcctctgtgtgtgcctctgtgtgtgcctctatgtgtgtctctgtgcgtgtctctgtgcgtgtctctgtgcgtgtctctgtgtgtgtctctgtgtgtgtctctgtgtgtgtctctgtgtgtgtctctgtgtttctctgtgtgtttctctgtgtgtgtctctgtgtgtgtctctgtgtgtgtctctatgtgtttctctgtgtgtgtctctgtgtgtgtctctgtgtgtgtctctgtgtgtctctatgtgtttctccatgtgtgtgtctctatgtgtgtgtgtg
>TU661299
cctgtctctctgtgcaCTCGTTCCTCAGGTTGAAAGACAGAGCAGAGGGAGTTGAGGACGAGGGTTCCCATCTTGGAGGAGTTTCGCTCAGAGCTCTTGTAGTAATCCAGGGAGTTATGGGTTAACACGAACCAGCGTTTCTTCAGCTTCAGAACATTACTCTTAGTTCCTGTCTTCATCTCCTTCTGGAGCCAACCTtggggtaggagggagagagaggggagagagagagagagagagaaaggagaatgatacagagagagggagaggagagagagagagagagagagagagagagagagaggagagatagagagagagagggagggagagagcgagagagagagagggagagagggagataggagagagatagagagagggagatgggagagagatagagagagggagagagagagagagggagagagggacagagagagagagagagagatgaggggagataggagagagagagagagagagagagagagagagagagagagggagagagggagggagggagagacaataaCTGTGTGGTTGAGTTGTGTACCAGTGTGGGTGTGTAATGAGTAACATTTCCTGAAGACTAACACGTTGCACAGACCTATGTTccaacacacacacgtgtgtgtatttgagtgtgtctctgtgcgtgtctctatgtgtgtctctgtgtgtgtctctatgtgtgtctctatgtgtgtctctgtgtgtgcctctgtgtgtgcctctgtgtgtgcctctatgtgtgtctctgtgcgtgtctctgtgcgtgtctctgtgcgtgtctctgtgtgtgtctctgtgtgtgtctctgtgtgtgtctctgtgtgtgtctctgtgtctgtctctgtgtgtttctctgtgtgtttctctgtgtgtgcctctatgtgtgtctctctgtgtttctctatgtgtgtctctctgtgtgtgtctctgtgtgtgtctctgtgtgtttctctgtgtgtttctctgtgtgtgtctctgtgtgtgtctctgtgtgtgtctctatgtgtttctctgtgtgtgtctctgtgtgtgtctctgtgtgtgtctctgtgtgtctctgtttgtgtctctgtgtgtctctatgtgtttctccatgtgtgtgtctctatgtgtgtgtgtg

Function

NR:

description
LOW QUALITY PROTEIN: unconventional myosin-X-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU661296 False 1001 lncRNA 0.50 5 16818542 16819890
TU661299 True 1135 TUCP 0.50 5 16818542 16819890

Neighbor

gene id symbol gene type direction distance location
LOC110528788 NA coding upstream 55397 16747415 ~ 16763145 (+)
LOC110528893 LOC105019901 coding upstream 127470 16683082 ~ 16691072 (+)
LOC118965266 NA coding upstream 130297 16683341 ~ 16688245 (+)
LOC110528869 LOC106574522 coding upstream 146969 16663674 ~ 16671573 (+)
LOC110528883 ola1 coding upstream 155493 16655086 ~ 16663049 (+)
LOC110528796 LOC106574532 coding downstream 86809 16906699 ~ 16920069 (+)
trnak-uuu NA coding downstream 105780 16925670 ~ 16925742 (+)
trnak-uuu-2 NA coding downstream 107326 16927216 ~ 16927288 (+)
trnak-cuu NA coding downstream 110377 16930267 ~ 16930339 (+)
trnan-guu-2 NA coding downstream 111134 16931024 ~ 16931097 (+)
G579556 NA non-coding upstream 15183 16801783 ~ 16803359 (+)
G579507 NA non-coding upstream 17928 16799416 ~ 16800614 (+)
G579553 NA non-coding upstream 22998 16795319 ~ 16795544 (+)
G579510 NA non-coding upstream 53934 16763451 ~ 16764608 (+)
G579531 NA non-coding upstream 75800 16742359 ~ 16742742 (+)
G579567 NA non-coding downstream 6572 16826462 ~ 16827211 (+)
G579571 NA non-coding downstream 7949 16827839 ~ 16828043 (+)
G579574 LOC106574531 non-coding downstream 9927 16829817 ~ 16830514 (+)
G579575 NA non-coding downstream 12036 16831926 ~ 16832209 (+)
G579577 NA non-coding downstream 15179 16835069 ~ 16835561 (+)
LOC110528786 omp-1 other upstream 354850 16457220 ~ 16463699 (+)
LOC110528915 LOC106574584 other upstream 770535 16046065 ~ 16048048 (+)
LOC110528906 LOC106574480 other upstream 813549 15993464 ~ 16004993 (+)
LOC110528902 atr other upstream 1319956 15492870 ~ 15498827 (+)
G578389 NA other upstream 1354177 15462245 ~ 15464365 (+)
LOC110527403 LOC106574539 other downstream 222519 17042409 ~ 17097924 (+)
si:ch211-181l5.2 cl10a other downstream 513834 17333699 ~ 17336419 (+)
G580179 NA other downstream 578903 17398793 ~ 17400533 (+)
G580315 LOC106575303 other downstream 850385 17670275 ~ 17680668 (+)
G580365 NA other downstream 993452 17813342 ~ 17816848 (+)

Expression


Co-expression Network