G579577


Basic Information

Item Value
gene id G579577
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 16835069 ~ 16835561 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU661319
cagtgtgtgtgtgtgtatatctgtgtgtgtgtgtatctgtgtgcgtgtgtctcagtgtgtgtgtgtgtgtatatctgtgtgtgtgtgtatctgtgtgtgtgtgtctcagtgtgtgtgtgtatatatctgtgtgtgtgtgtgcgtgtatctgtgtgtatgtgtctcagtgtgtgtgtgtgtatatctgtatgtgtgtgtgtgtgtgtgtgtgtgtgtttacctgttgtaCTCCAGTTGTTCCAGGGAGAAGATGTGTTTGTTGAAGTACTCCTGGAGCTTCTCGTTGGCGTAGTTGATGTTGAACTGCTCAAACCGATTCACCTAgaggaacaacacacacacctttgagatatggagagaacgagtgtgtgtgtgtgtgtgtgtgtgtttgtgtgcatgtgagtgtgtgtgcatgtgagtgtgagtgtgtgtgattgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgagtgtgagtgtgtgtgtgtgtgtgcg

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU661319 True 493 lncRNA 0.46 1 16835069 16835561

Neighbor

gene id symbol gene type direction distance location
LOC110528788 NA coding upstream 71924 16747415 ~ 16763145 (+)
LOC110528893 LOC105019901 coding upstream 143997 16683082 ~ 16691072 (+)
LOC118965266 NA coding upstream 146824 16683341 ~ 16688245 (+)
LOC110528869 LOC106574522 coding upstream 163496 16663674 ~ 16671573 (+)
LOC110528883 ola1 coding upstream 172020 16655086 ~ 16663049 (+)
LOC110528796 LOC106574532 coding downstream 71138 16906699 ~ 16920069 (+)
trnak-uuu NA coding downstream 90109 16925670 ~ 16925742 (+)
trnak-uuu-2 NA coding downstream 91655 16927216 ~ 16927288 (+)
trnak-cuu NA coding downstream 94706 16930267 ~ 16930339 (+)
trnan-guu-2 NA coding downstream 95463 16931024 ~ 16931097 (+)
G579575 NA non-coding upstream 2860 16831926 ~ 16832209 (+)
G579574 LOC106574531 non-coding upstream 4555 16829817 ~ 16830514 (+)
G579571 NA non-coding upstream 7026 16827839 ~ 16828043 (+)
G579567 NA non-coding upstream 7858 16826462 ~ 16827211 (+)
G579566 NA non-coding upstream 15179 16818542 ~ 16819890 (+)
G579581 NA non-coding downstream 12531 16848092 ~ 16848474 (+)
G579600 NA non-coding downstream 24019 16859580 ~ 16860072 (+)
G579596 NA non-coding downstream 97570 16933131 ~ 16938136 (+)
G579638 NA non-coding downstream 139571 16975132 ~ 16975406 (+)
G579639 NA non-coding downstream 143116 16978677 ~ 16978965 (+)
LOC110528786 omp-1 other upstream 371377 16457220 ~ 16463699 (+)
LOC110528915 LOC106574584 other upstream 787062 16046065 ~ 16048048 (+)
LOC110528906 LOC106574480 other upstream 830076 15993464 ~ 16004993 (+)
LOC110528902 atr other upstream 1336483 15492870 ~ 15498827 (+)
LOC110527403 LOC106574539 other downstream 206848 17042409 ~ 17097924 (+)
si:ch211-181l5.2 cl10a other downstream 498163 17333699 ~ 17336419 (+)
G580179 NA other downstream 563232 17398793 ~ 17400533 (+)
G580315 LOC106575303 other downstream 834714 17670275 ~ 17680668 (+)
G580365 NA other downstream 977781 17813342 ~ 17816848 (+)

Expression


Co-expression Network