XLOC_025197 (BX470185.1)


Basic Information

Item Value
gene id XLOC_025197
gene name BX470185.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 16874401 ~ 16883304 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049755
ctcagctcggcgccatattatgggaatcaaaagatgaagattacagtactAATTGCgaacgtgcacaaagctttccccaatgtggacacacaggtttacagctcaacctctaaagtcccatatctggctgaggagactgtggatcatccagaacatcaccagtggaaaaaaggtgtgaatgcatcctcaaagcccctaagtgagggagtacatggatgctgggcatgatgaagcgcaaaccttgatgtgcaacaccaccttatgaatctacactagttacattaacatttagcagactcttttgtctaaagtgacttacaattgaggacacattcagcaaatcaacaagaaaaggcgatacacccaagatgtgctaattatacaaaaaaattaagaattaagaatgcttctTAATGCGACTTGCGCGCCCAGTCGTCCAGCCAATCTAAGTTTTTGCCTTCTCCTCGGAAGGACCCCCATCTAACGCCGTAGTCCAGCAGCAGCTACTCCCCCATGGAGATGTCCCGAAGGGCGCGGAATGGAACGCACTCCCGTGGCCCCTGTGGCAGCGTTAGAAGCTTCACAAAGGGCCGCACGTTGTTGCGGTGCCAGGAGTGGTTCATAAGCCTTCCGAAGGTTTTCATGCCCGGGTGACAGGGGCAGGGCCAGGACTGGGCATCCAGGCAAAGGGTCCTCCCACCAAGCCCTTTAAAGAAATACATGTAGGAGGAGGAGACACGGGAGAGGGCCTCCCGTCTCCTTAAGCCCTCCTCGTGGGACAACTCCTCCCCATGGTAATCACAAATAATTTCTCCTTTTTTAAAGGGCATGGTGGTGACGACTCCTCCGCCTTTGTCCCCAACGGTCTGGATCTCCAGTCCTTTCCAAGACCTCTGGACCACCGACATGACCAGCTGCTGGTGACGGCGGACAGCACCCTCGAGAGCTACCACTCTGCCAGGACGCCGTCCACCGTCG
>TCONS_00052632
ggatgctgggcatgatgaagcgcaaaccttgatgtgcaacaccaccttatgaatctacactagttacattaacatttagcagactcttttgtctaaagtgacttacaattgaggacacattcagcaaatcaacaagaaaaggcgatacacccaagatgtgctaattatacaaaaaaattaagaattaagaatgcttctTAATGCGACTTGCGCGCCCAGTCGTCCAGCCAATCTAAGTTTTTGCCTTCTCCTCGGAAGGACCCCCATCTAACGCCGTAGTCCAGCAGCAGCTACTCCCCCATGGAGATGTCCCGAAGGGCGCGGAATGGAACGCACTCCCGTGGCCCCTGTGGCAGCGTTAGAAGCTTCACAAAGGGCCGCACGTTGTTGCGGTGCCAGGAGTGGTTCATAAGCCTTCCGAAGGTTTTCATGCCCGGGTGACAGGGGCAGGGCCAGGACTGGGCATCCAGGCAAAGGGTCCTCCCACCAAGCCCTTTAAAGAAATACATGTAGGAGGAGGAGACACGGGAGAGGGCCTCCCGTCTCCTTAAGCCCTCCTCGTGGGACAACTCCTCCCCATGGTAATCACAAATAATTTCTCCTTTTTTAAAGGGCATGGTGGTGACGACTCCTCCGCCTTTGTCCCCAACGGTCTGGATCTCCAGTCCTTTCCAAGACCTCTGGACCACCGACATGACCAGCTGCTGGTGACGGCGGACAGCACCCTCGAGAGCTACCACTCTGCCAGGACGCCGTCCACCGTCGGCACGTCGGTGGTCCATGCAGTCTCGGCCCTAATGGCACTCTGCACCCGGGCCAGGGAAGGCTTCCGGCCCTTCCGGTCGCTGCACCGCTCAAGGAGATGGCGCGTCCGGATTCCGAGCTGCTCCCCCCTCCAGTGATGGTAGTAGCCACGGTCGGTGAACCCGATCGCGGCTGCCTCCGCCCTACTAGGGGGCTTCCCACCCAAGCCTACCGGAAACTTGTCCTGAAAAGCCCCCCAATAACGAGGCGGAGGCAATGGAGGGGGCTGCAGGCCAGAGGTGGACGGCCTCTTCTCGCCAGGTGGAGCAGGTGGCTGAGACAGTGCAGCTGGAGGAGAAGCCGAAGCTGGAGCCGGAGGAGAAGACATGGCAGCGGTGGTAGCGGGCGGCGCGGGTTGCCTCTTGACGTACTTTGCTTTCAGGCGCAGGACGTCCTGGCTGGGGTTAGTGAGGGGGAGTCCTGACGCTCCCAGGAAGAAGCATCCTTTGTCCTCTGCCCCCAGAGCCCGAGCCCTAAGGCAGAGCGGCCGGATGTGCCTGTAATAGCATTCCAACCACTCCTCCTCTTTCCGGCTCAGGCTCACGGTTTTCTCGGGAAGCGTCAGGATTACAGCCTCTCCCTCTGGCCGCCTGCCCAGCCACTCCTGCACCCTAAGCTCCCTGACGCTTCCAGGACCCAGACGGTGTAGCCACATTAGAGTGGCAACGCAGAAGGTGCAAAAATCTGTCTGGGTCCTGGGAGGCAGCTCGCACCGCTGGCCGAGGCGACGGGAGACCTCAGCCATATCCGCCTCCATAGTGGACGGACATGGACTTTTGCTGCCGCTGCTGAGTGTAATGGGCTGCTCCGCGACGAGGAAGCCCTTGGCCCCGAAGTACTTGGCCAAGGAGCTGCAGGTGGGGTCCTCCTGCACAAGGCCCCGCACCTCCGCCAGGCCTACCACCCTCCCCTCTGTGACAAACCTGGCGCGCGACTCCAAGGCATGAGCCACCTCCTCCAGGACCAGGGCCTCCTCAGCGCCGCTCATGCAGACCTGCCTCAAGTGCCCTGAGAGGTCCTCCTGAACTGTCAGGCACCCGAGGCAGTGTACAGCAACGCTATGGTCAGTGTTGTCCATCGTCGTTTCGAAATCGTTACCTCAGGTCGACACGGTGGGCGGAGTCgtaagcatatttttaaaatcatttattgttttcaatttatttcatacttgtattactattattttattagtattaatgttttaactttattgtaataagtgaagatgcagataaagacagtatttggattttgacaatcattttattgctggaaaatgtgtaaatctgtaaaaatgctattgaataaactcaatgaaacggaaaatgtttttttttatttggttaaacataacaatatcaattttagaataattgaacctaaataactacattga
>TCONS_00052633
CCATCTAACGCCGTAGTCCAGCAGCAGCTACTCCCCCATGGAGATGTCCCGAAGGGCGCGGAATGGAACGCACTCCCGTGGCCCCTGTGGCAGCGTTAGAAGCTTCACAAAGGGCCGCACGTTGTTGCGGTGCCAGGAGTGGTTCATAAGCCTTCCGAAGGTTTTCATGCCCGGGTGACAGGGGCAGGGCCAGGACTGGGCATCCAGGCAAAGGGTCCTCCCACCAAGCCCTTTAAAGAAATACATGTAGGAGGAGGAGACACGGGAGAGGGCCTCCCGTCTCCTTAAGCCCTCCTCGTGGGACAACTCCTCCCCATGGTAATCACAAATAATTTCTCCTTTTTTAAAGGGCATGGTGGTGACGACTCCTCCGCCTTTGTCCCCAACGGTCTGGATCTCCAGTCCTTTCCAAGACCTCTGGACCACCGACATGACCAGCTGCTGGTGACGGCGGACAGCACCCTCGAGAGCTACCACTCTGCCAGGACGCCGTCCACCGTCGGCACGTCGGTGGTCCATGCAGTCTCGGCCCTAATGGCACTCTGCACCCGGGCCAGGGAAGGCTTCCGGCCCTTCCGGTCGCTGCACCGCTCAAGGAGATGGCGCGTCCGGATTCCGAGCTGCTCCCCCCTCCAGTGATGGTAGTAGCCACGGTCGGTGAACCCGATCGCGGCTGCCTCCGCCCTACTAGGGGGCTTCCCACCCAAGCCTACCGGAAACTTGTCCTGAAAAGCCCCCCAATAACGAGGCGGAGGCAATGGAGGGGGCTGCAGGCCAGAGGTGGACGGCCTCTTCTCGCCAGGTGGAGCAGGTGGCTGAGACAGTGCAGCTGGAGGAGAAGCCGAAGCTGGAGCCGGAGGAGAAGACATGGCAGCGGTGGTAGCGGGCGGCGCGGGTTGCCTCTTGACGTACTTTGCTTTCAGGCGCAGGACGTCCTGGCTGGGGTTAGTGAGGGGGAGTCCTGACGCTCCCAGGAAGAAGCATCCTTTGTCCTCTGCCCCCAGAGCCCGAGCCCTAAGGCAGAGCGGCCGGATGTGCCTGTAATAGCATTCCAACCACTCCTCCTCTTTCCGGCTCAGGCTCACGGTTTTCTCGGGAAGCGTCAGGATTACAGCCTCTCCCTCTGGCCGCCTGCCCAGCCACTCCTGCACCCTAAGCTCCCTGACGCTTCCAGGACCCAGACGGTGTAGCCACATTAGAGTGGCAACGCAGAAGGTGCAAAAATCTGTCTGGGTCCTGGGAGGCAGCTCGCACCGCTGGCCGAGGCGACGGGAGACCTCAGCCATATCCGCCTCCATAGTGGACGGACATGGACTTTTGCTGCCGCTGCTGAGTGTAATGGGCTGCTCCGCGACGAGGAAGCCCTTGGCCCCGAAGTACTTGGCCAAGGAGCTGCAGGTGGGGTCCTCCTGCACAAGGCCCCGCACCTCCGCCAGGCCTACCACCCTCCCCTCTGTGACAAACCTGGCGCGCGACTCCAAGGCATGAGCCACCTCCTCCAGGACCAGGGCCTCCTCAGCGCCGCTCATGCAGACCTGCCTCAAGTGCCCTGAGAGGTCCTCCTGAACTGTCAGGCACCCGAGGCAGTGTACAGCAACGCTATGGTCAGTGTTGTCCATCGTCGTTTCGAAATCGTTACCTCAGGTCGACACGGTGGGCGGAGTCTGTTCTTCCTGCGCACACACActtgcactgctctctggagttCCCGTTTCCCAGGGGAATCAGAGGAACTCTGCTGTTTTTCAGGCAAGACGATTCTCTTTCCTTTGGATTCTTCATCTTCTGATGCTGTGATTCTGCCAGTGGTGTAAATGCGGAGGGCCACGGTAACAAGGAAAATT

Function

GO:

id name namespace
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001706 endoderm formation biological_process
GO:0001708 cell fate specification biological_process
GO:0045995 regulation of embryonic development biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0022603 regulation of anatomical structure morphogenesis biological_process
GO:0007492 endoderm development biological_process
GO:0007498 mesoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0003401 axis elongation biological_process
GO:0003154 BMP signaling pathway involved in determination of left/right symmetry biological_process
GO:0035295 tube development biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0045165 cell fate commitment biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:0030509 BMP signaling pathway biological_process
GO:0090092 regulation of transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0010470 regulation of gastrulation biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0007369 gastrulation biological_process
GO:1900094 regulation of transcription from RNA polymerase II promoter involved in determination of left/right symmetry biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0061312 BMP signaling pathway involved in heart development biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:0060026 convergent extension biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0060028 convergent extension involved in axis elongation biological_process
GO:0060029 convergent extension involved in organogenesis biological_process
GO:0003303 BMP signaling pathway involved in heart jogging biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0072045 convergent extension involved in nephron morphogenesis biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0071772 response to BMP biological_process
GO:0071773 cellular response to BMP stimulus biological_process
GO:1901213 regulation of transcription from RNA polymerase II promoter involved in heart development biological_process
GO:0009790 embryo development biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000092120

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049755 False 978 lncRNA 0.51 4 16874401 16876258
TCONS_00052632 False 2203 lncRNA 0.54 1 16875494 16877696
TCONS_00052633 True 1844 lncRNA 0.61 3 16875757 16883304

Neighbor

gene id symbol gene type direction distance location
XLOC_025196 stk17al coding upstream 1492 16841942 ~ 16872909 (+)
XLOC_025195 lrrc3cb coding upstream 100327 16771797 ~ 16774074 (+)
XLOC_025194 tmem86b coding upstream 104083 16762483 ~ 16770318 (+)
XLOC_025193 gys1 coding upstream 124365 16722014 ~ 16750036 (+)
XLOC_025192 zgc:55558 coding upstream 190778 16662209 ~ 16683623 (+)
XLOC_025198 atp6v0a1a coding downstream 38922 16922226 ~ 16973125 (+)
XLOC_025199 cavin1a coding downstream 92791 16976095 ~ 17012340 (+)
XLOC_025200 stat3 coding downstream 147361 17030665 ~ 17107445 (+)
XLOC_025201 stat5a coding downstream 368238 17251542 ~ 17331919 (+)
XLOC_025202 si:ch211-210g13.5 coding downstream 463198 17346502 ~ 17523082 (+)
XLOC_025429 BX649540.1 misc downstream 13365435 30248739 ~ 30249036 (+)
XLOC_025188 CR388224.1 non-coding upstream 501274 16373012 ~ 16373127 (+)
XLOC_025185 NA non-coding upstream 633061 16186593 ~ 16241340 (+)
XLOC_025184 NA non-coding upstream 712942 16153224 ~ 16161459 (+)
XLOC_025183 CR387933.1 non-coding upstream 818669 16055009 ~ 16055732 (+)
XLOC_025180 NA non-coding upstream 1007999 15865921 ~ 15866402 (+)
XLOC_025203 CU207238.1 non-coding downstream 511935 17395239 ~ 17461885 (+)
XLOC_025215 NA non-coding downstream 1157309 18040613 ~ 18061783 (+)
XLOC_025218 NA non-coding downstream 1306305 18189609 ~ 18197126 (+)
XLOC_025227 NA non-coding downstream 1787520 18670824 ~ 18672291 (+)
XLOC_025229 AL772362.2 non-coding downstream 1888224 18771528 ~ 18788485 (+)

Expression


Co-expression Network