G579717


Basic Information

Item Value
gene id G579717
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 17139509 ~ 17139733 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU661482
TGAAATATGTTCCAGTGTTGAATGGTGCAATTCAAGCCAGCCATGTGACCTGAACATTCAATCAGATGTGGATGTTTGTTTTCCACCTAAATGCAAATGTACAGTTACATAACAACCACCTTTGTCTTGACCCTGTGACCTCCTCGTCCCAAAGGTCATACAGCAGCTCTACACTGATTTACAGCCTACCCATTGGTCCATTATAAGGATTATTCTCTGGAGGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU661482 True 225 lncRNA 0.43 1 17139509 17139733

Neighbor

gene id symbol gene type direction distance location
LOC110527403 LOC106574539 coding upstream 41980 17042409 ~ 17097924 (+)
LOC110527402 LOC106575321 coding upstream 80090 17057757 ~ 17065172 (+)
LOC110528797 LOC106575326 coding upstream 123962 17002517 ~ 17015547 (+)
LOC110527400 LOC106575325 coding upstream 140015 16948114 ~ 16999494 (+)
LOC110527399 LOC106574533 coding upstream 191748 16940571 ~ 16947761 (+)
LOC110528798 poglut1 coding downstream 47385 17187118 ~ 17189472 (+)
LOC110527406 cc001 coding downstream 49799 17189532 ~ 17197507 (+)
LOC110528799 LOC106575315 coding downstream 77195 17216928 ~ 17260295 (+)
LOC118965348 LOC106574556 coding downstream 182932 17322665 ~ 17326351 (+)
LOC110527408 LOC106574552 coding downstream 189147 17328880 ~ 17331837 (+)
G579708 NA non-coding upstream 14608 17124629 ~ 17124901 (+)
G579704 NA non-coding upstream 19438 17119785 ~ 17120071 (+)
G579697 NA non-coding upstream 30126 17109099 ~ 17109383 (+)
G579696 NA non-coding upstream 31018 17108246 ~ 17108491 (+)
G579695 NA non-coding upstream 33452 17105680 ~ 17106057 (+)
LOC110527404 LOC106575319 non-coding downstream 18144 17108664 ~ 17158356 (+)
G579684 NA non-coding downstream 19002 17158735 ~ 17160551 (+)
G579945 NA non-coding downstream 22974 17162707 ~ 17163035 (+)
G579956 NA non-coding downstream 36162 17175895 ~ 17176780 (+)
G579566 NA other upstream 319619 16818542 ~ 16819890 (+)
LOC110528786 omp-1 other upstream 675817 16457220 ~ 16463699 (+)
LOC110528915 LOC106574584 other upstream 1091502 16046065 ~ 16048048 (+)
LOC110528906 LOC106574480 other upstream 1134516 15993464 ~ 16004993 (+)
si:ch211-181l5.2 cl10a other downstream 193991 17333699 ~ 17336419 (+)
G580179 NA other downstream 259060 17398793 ~ 17400533 (+)
G580315 LOC106575303 other downstream 530542 17670275 ~ 17680668 (+)
G580365 NA other downstream 673609 17813342 ~ 17816848 (+)
G580997 NA other downstream 1352494 18492227 ~ 18492909 (+)

Expression


Co-expression Network