XLOC_002520 (marveld2a)


Basic Information

Item Value
gene id XLOC_002520
gene name marveld2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 2943676 ~ 2971407 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004707
ATGCACCACTACAACGATGCCCCAGCAGGCTCGCTCGCCAGTCTTCACAGCTTGGTTGAGCACAGGGCCGATTCTTTATACTCCGAACCTTTTCCGCCACCTCCTCTGCCAGACCAACCACCAATAGGCCCTGAGTTTGACCCCAGTGGCAGCGAGGACAACGGGGACTCTGCCATTGACATCAAACCCGTCCACCGTTTCATCCCAGACTCATGGAAAAACTTGTTCAGGTCCAGCAGTGGAAGCAGCAAGTTGAAGTCGATGTTGGGATCAAGCAGCAAAAACACGACGACTGACGGCGTTCGCTGTTCTCCGCCACACTCCCCATCGGTTCCTGGCTCTTACCGCGACCCGTACGGTGGATCCGGAGGCAGCTATAACTCCCGTAAAGAGCGTGAAGCAATGCTTTTAGGAAATCCCGTTGAATCAATCGACGGCCGCACTGCGCACACAGCTTTGACTTACAGCGAAAAGGTAGAGGAGTACAACCAGCGTTACGCATACATGAAGTCTTGGGCTGGACTTTTACGTATTCTCGGGTGCGTCGAGCTGCTTTTGGGGGCAGCCATTTTTGCTTGTGTATGTGCATATATTCATAAAGACAATGAGTGGTATAACACGTTTGGTTACTCGCAGCCTGGTGGCTTCTATGGAGGAGGTTACGGAGGTTATGGAGGCTCTTATGGAAGCGGTTATGGCAATGCCAACTACTCTGGACCAAAGACACCGTTCATCTTGGTGGTAGCAGGATTGGCATGGATCGTGACCATTATCATGCTTGTCTTGGGAATGACCATGTACTATCAGACTATACTTCTAGACTCAAGTTGGTGGCCTTTAACAGAGTTCGTCATAAACCTTGCTCTTGCACTTCTGTTTTTGGCGGCCGGCTGTGTATATGTGAATGACACCTTACGAGGCGGACTTTGTTACTATCCGGTCTTCAATAATGGCATCAATGGTGCTTTCTGCCGCACCGAAGCAGGACAGACAGCTGCGATAATCTTCCTGTTTTTCACCATGATCGTGTACTTGGTTGGGGCCATAGTGTGTCTGAAACTGTGGCGGCATGAGGCAGCTCGGCGACTACGAGAACGACATGGCCAGGAGATGCAGCCAAGAGATTCTCCTGCTGCGGTACATTTGGTTGTTGATGGTTCAAGAGAGCCAGTGTCTGTTTTAGCGCCggtacagaaaacacacactgccGTCTCCAATCCTAAAGTTGTGAAAGGACACATTCCAGCGGGACACACTCCTAAACCTGTGATCATGCCGGATTATGTTGCTAAATATCCAGCTATTCGCACCGATGAGCAGCGGGACCAGTATAAAGCTGTGTTTAATGACCAGTACTCCGAGTATAAAGAGCTCCATGTTGAAGTGCAGGCGGTACTCAAGAAATTTGATGAAATGGATGTCATGATGCAGAATTTACCGCAAAACCCCACCAGCTACACGGAGCGCGACCGCATCAACAAAATCTTGCAGGATTATCAGAAGAAAAAGATGGATCCTTCATTCCTGGAGAAGAAGGAAAGATGCGAGTACCTGAAGAACAAGCTTTCCCACATCAAGCAGAGGATTCACGAATATGATAAAGTGATGGGCTGGAACGATGGTTATGGCTTACACTGATGCCACTGAATGCAAACCTGCTGCGACAGTCCTTCATTTCCCCACTAGGATGCTGAAcatttacaccaggggtgtcaaactcaattcctggagggccgaagccctgcacagtttagttccaaccctgctccaacacacttacctgtaggtttcaaacaagcctgaaggactctattagtttgatcaggtgtgtttaattagggttggaactaaactgtgcagagctgcggcccttttggaaccgagtttgacacctgtgatttacACTGAGGATACCTCCAGCAGTAATGCAGTGAGGCATCAATAGCATGCATGCTCATAATCTACATGCTGAGCACTGAAGAAGGCTCTTTTCTCTGCTGTATTTCACTATATGCTGACTACAAGTATATGAATGAGCTTTTTTATTGGaacgtgtgtgtgtattcagaACTGCTGTTTTTTATTCGTTTATCTGAATGATTTTATGCACTGTTGAATGAATTGTCTGCGTTCTGATCCGATCGGAACAACAGCATGTTGCTTTGCCCTTATATTTTCAGTATTGTAAACGACGCGTTCAGTTGAGTTGAATATGATATGCAAATGCTGTAAAGAGTGAAAACGTCTGTGCATTTCATGCTGATTTGTTTGTAACTGATTTTatcttttaataaaaaagaaaaaagaaagtcaagcCAAGAGgcaaatacacacacagcaaGAACATGCATAGACATTTGGGAGGAAATGCAATAGTAAGGTTGCAGGTTTTATTCAGTTTGACTTGTGCTCCTTGATTTTCTGTCTAGACTACTTTATCAGACGACAGGCTAGTTTCAGCACACACTTGTTTCATTTCTTTCATTGTTTTCATTTAAGAAAAACCTTAATCTTAAaacaatctatctatccatccatctatctatccatccatctatccatccatccatccatccatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatcatctatctatctatctatctatcatctatccatccatccatccatccatccatccatccatccatctatctatctatctatccatccatctatctatctatccatccatctatccatctatatatccatctatctatttatttatctatctatctatcatttatctatctatccatctatttatctatctatctatcatctatctatctatccatctatctatctatctatctatctatccatctatctatccatctatctatctatttatctatctatctatctatccatctatctatccatctatctatatatccatctatctatctatttatttatctatctatctatctatcatctttctatccatctatctatcatccatctatctatttatctatctatccatctatctatttatctatctatcatctatccatctatctatccatctatttatttatctatctatcatctatcaatttatctatccatctatctatctatctatttatctatctatctatttatcatctatccatctatctatcatctatctatctatccatctatctatttatctatctatcatctatctatccatctatctatttatctatctatcatctatctatctatttatctatcatctatctatctatcatctatctatctatccatctatctatctatctatcatctatctatctatccatctatctatctttttatctatctatttatctatctatcatctatctatccatctatctatctatttatctatcatctatctatccatctatttatccatctatctatttatctatctatcatatatctatccatccatccatctatctatctatatccatgcatccatctatatttatatctattcatccatccatctatctatccatccatccatccatctatatatctatctatattcatccatccatctatctatatccatgcatccatccatctatatatctatcgtccatctatctatatatatatgtgtgtgtgtgtgtgtatatatatatccatccatccatctatctatatccatccatctatatatctatctatccatctatatttatatctatccatccatctaattatccatctatctatccatccatctattttaatGGAAAAACCCTATGCATTAACACACACGCAAAATTAATGAACCTTCACAcatgaaaaatgctaattttagatggcatttagaggttttttggATCTGATctcttcatatatttatatatattaaaaagtaatacatctagttcaggggtgggcaaactcggtcctggagggccgctgtcctgcatagtttagctccaactctaatcaaaaacacctgaacatgccaatcagtgtcttcaagatcactagaaatctacaagcaggtgtgtttgattagagttggagttaaactgtgcaggacaccggccctccaggaccgagtttgcccatccctgatctagttacataaaaatatgactaagaacacaggtgtcaaactcagttccaaaagggccgcagctctgcacagtttagttccaaccctaattaaacacacctgatcaaactaattgagtccttcaggcttgtttgaaacctacaggtaagtgtgttggagcagggttggaactaaactgtgcagggcttcggccctccaggaattgagtttgacacccctgactaagaatttgtaatatattttttaaagtaatttcatatatatatatatatatagtttgtcagaagtcagaattattagccccgtttttttccccaatttttgtttaacagagagaagactttttcagcacatttctaaacataatagttttaaaatctaatatctgataactgatttattttatctttgtcatgatgacagtaaataatattgggctagatatttatcaagacacttctatacagcttaaagtgacatttaaaggctgaactaggttaattaggttaactaggcaggttagggtaattaggcaatttattgtataacgatggtttgttctttagaccatcaaaaaatagagcttaaggggctaataatattgagcttaaaactttttttttattaaaaactgcttttattctagccgaaataaaacaaataatactttctccagaagaaaaaatattatcagacatactgtgaacatttctttcctctgttaaacatcatttgggaaacataaaaaaaaagaaaaattcaaagaagGTTTATTTATTCTGATTTCAACAGTATATATAATTTAGTTACATAAAAAAGTGACttaatatagtaatatattactttttatagtaactacccaatacactcaccggccactataataggtacacctatccaactgcttgttaatgtaaatttccaatcagccaatcacatggcagcaactcgatgcatttaggcatgcagacatagTCAAGACCATGcaattcaaaccaagcatcagaatggggaagagaggtgattttagtgactttaaatgtggcatggttattggtggcagacgggctgctctgagtatttcagaaactgctgatctactgggatttttcacACACAActttctctagggtttacagagaatggtctgaaaaggagaaaatatccagtgagcggcagttctgtggacgcaaatgccttgttgatgccagaggtcagaggagaatggccagactggtgccagctgatagaaaggcaactgtatctcaaccacttgttacaaccaagatctgcagaagagcaccatgtcataaagcgtgaatcatctcagactggtttcttgaacatgacaatgagttcactgtactcaaatggcctccacagtcaccagagctcaatcctatagagcacctttggcatgtggtggaacggaagattcgcatcatggaaacatgcaaactccacacggaaatgtcaACAGACCCAAGcgggaccagcgaccttcttgctgtgaggcaacagtgctaaccactaaggaaat
>TCONS_00004708
GTGGTACAACTTTCCAAACCTGTGTGTTTCCCGaaaaaaacatatagagaaacaaaAACCCCTTTGATAGTGGGAAAGTCCTTGGGATTTTCATACATCCGATGAAGTTTTACACACTGAACTCAAGACCAATGTAACCTACTGTATGCTTAAGGAAGAGCGTAACAATGGAGAttgttgtttttcttattttctgCTGTTGATGCAGAGTTGAGCAGTAGTGTATGATTACCCAATCAGACATCTAGTGCTTGAACAGGGATAACTGCGTTCCCTGGAGGAAATTCCTTTCAGCATTGTCTCTGAAACATGCACCACTACAACGATGCCCCAGCAGGCTCGCTCGCCAGTCTTCACAGCTTGGTTGAGCACAGGGCCGATTCTTTATACTCCGAACCTTTTCCGCCACCTCCTCTGCCAGACCAACCACCAATAGGCCCTGAGTTTGACCCCAGTGGCAGCGAGGACAACGGGGACTCTGCCATTGACATCAAACCCGTCCACCGTTTCATCCCAGACTCATGGAAAAACTTGTTCAGGTCCAGCAGTGGAAGCAGCAAGTTGAAGTCGATGTTGGGATCAAGCAGCAAAAACACGACGACTGACGGCGTTCGCTGTTCTCCGCCACACTCCCCATCGGTTCCTGGCTCTTACCGCGACCCGTACGGTGGATCCGGAGGCAGCTATAACTCCCGTAAAGAGCGTGAAGCAATGCTTTTAGGAAATCCCGTTGAATCAATCGACGGCCGCACTGCGCACACAGCTTTGACTTACAGCGAAAAGGTAGAGGAGTACAACCAGCGTTACGCATACATGAAGTCTTGGGCTGGACTTTTACGTATTCTCGGGTGCGTCGAGCTGCTTTTGGGGGCAGCCATTTTTGCTTGTGTATGTGCATATATTCATAAAGACAATGAGTGGTATAACACGTTTGGTTACTCGCAGCCTGGTGGCTTCTATGGAGGAGGTTACGGAGGTTATGGAGGCTCTTATGGAAGCGGTTATGGCAATGCCAACTACTCTGGACCAAAGACACCGTTCATCTTGGTGGTAGCAGGATTGGCATGGATCGTGACCATTATCATGCTTGTCTTGGGAATGACCATGTACTATCAGACTATACTTCTAGACTCAAGTTGGTGGCCTTTAACAGAGTTCGTCATAAACCTTGCTCTTGCACTTCTGTTTTTGGCGGCCGGCTGTGTATATGTGAATGACACCTTACGAGGCGGACTTTGTTACTATCCGGTCTTCAATAATGGCATCAATGGTGCTTTCTGCCGCACCGAAGCAGGACAGACAGCTGCGATAATCTTCCTGTTTTTCACCATGATCGTGTACTTGGTTGGGGCCATAGTGTGTCTGAAACTGTGGCGGCATGAGGCAGCTCGGCGACTACGAGAACGACATGGCCAGGAGATGCAGCCAAGAGATTCTCCTGCTGCGGTACATTTGGTTGTTGATGGTTCAAGAGAGCCAGTGTCTGTTTTAGCGCCggtacagaaaacacacactgccGTCTCCAATCCTAAAGTTGTGAAAGGACACATTCCAGCGGGACACACTCCTAAACCTGTGATCATGCCGGATTATGTTGCTAAATATCCAGCTATTCGCACCGATGAGCAGCGGGACCAGTATAAAGCTGTGTTTAATGACCAGTACTCCGAGTATAAAGAGCTCCATGTTGAAGTGCAGGCGGTACTCAAGAAATTTGATGAAATGGATGTCATGATGCAGAATTTACCGCAAAACCCCACCAGCTACACGGAGCGCGACCGCATCAACAAAATCTTGCAGGATTATCAGAAGAAAAAGATGGATCCTTCATTCCTGGAGAAGAAGGAAAGATGCGAGTACCTGAAGAACAAGCTTTCCCACATCAAGCAGAGGATTCACGAATATGATAAAGTGATGGGCTGGAACGATGGTTATGGCTTACACTGATGCCACTGAATGCAAACCTGCTGCGACAGTCCTTCATTTCCCCACTAGGATGCTGAAcatttacaccaggggtgtcaaactcaattcctggagggccgaagccctgcacagtttagttccaaccctgctccaacacacttacctgtaggtttcaaacaagcctgaaggactctattagtttgatcaggtgtgtttaattagggttggaactaaactgtgcagagctgcggcccttttggaaccgagtttgacacctgtgatttacACTGAGGATACCTCCAGCAGTAATGCAGTGAGGCATCAATAGCATGCATGCTCATAATCTACATGCTGAGCACTGAAGAAGGCTCTTTTCTCTGCTGTATTTCACTATATGCTGACTACAAGTATATGAATGAGCTTTTTTATTGGaacgtgtgtgtgtattcagaACTGCTGTTTTTTATTCGTTTATCTGAATGATTTTATGCACTGTTGAATGAATTGTCTGCGTTCTGATCCGATCGGAACAACAGCATGTTGCTTTGCCCTTATATTTTCAGTATTGTAAACGACGCGTTCAGTTGAGTTGAATATGATATGCAAATGCTGTAAAGAGTGAAAACGTCTGTGCATTTCATGCTGATTTGTTTGTAACTGATTTTatcttttaataaaaaagaaaaaagaaa

Function

symbol description
marveld2a Predicted to act upstream of or within cell-cell junction organization and sensory perception of sound. Predicted to be located in bicellular tight junction; plasma membrane; and tricellular tight junction. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 49. Orthologous to human MARVELD2 (MARVEL domain containing 2).

GO:

id name namespace
GO:0007605 sensory perception of sound biological_process
GO:0045216 cell-cell junction organization biological_process
GO:0061689 tricellular tight junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050411-59 Predicted to act upstream of or within cell-cell junction organization and sensory perception of sound. Predicted to be located in bicellular tight junction; plasma membrane; and tricellular tight junction. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 49. Orthologous to human MARVELD2 (MARVEL domain containing 2).

Ensembl:

ensembl_id ENSDARG00000025076

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004707 False 5684 mRNA 0.39 6 2943676 2960665
TCONS_00004708 True 2618 mRNA 0.46 9 2947051 2971407

Neighbor

gene id symbol gene type direction distance location
XLOC_002519 oclna coding downstream 202 2924775 ~ 2943474 (-)
XLOC_002518 NA coding downstream 44372 2897979 ~ 2899304 (-)
XLOC_002517 ddx56 coding downstream 67941 2856377 ~ 2875735 (-)
XLOC_002516 ash2l coding downstream 154884 2759226 ~ 2788792 (-)
XLOC_002515 mier3a coding downstream 230436 2695464 ~ 2713240 (-)
XLOC_002521 ankrd34ba coding upstream 60229 3031636 ~ 3033270 (-)
XLOC_002522 ube2l3a coding upstream 161691 3133098 ~ 3138859 (-)
XLOC_002523 pi4kaa coding upstream 215882 3187289 ~ 3258073 (-)
XLOC_002524 slc25a1b coding upstream 297174 3268581 ~ 3295197 (-)
XLOC_002525 NA coding upstream 350730 3322137 ~ 3332362 (-)
XLOC_002510 NA non-coding downstream 990217 1948097 ~ 1953459 (-)
XLOC_002506 NA non-coding downstream 1202501 1678283 ~ 1741175 (-)
XLOC_002505 NA non-coding downstream 1225039 1669144 ~ 1718637 (-)
XLOC_002504 NA non-coding downstream 1276046 1666342 ~ 1667630 (-)
XLOC_002529 CU571170.1 non-coding upstream 535133 3506540 ~ 3506654 (-)
XLOC_002530 FP236598.1 non-coding upstream 797244 3768651 ~ 3768766 (-)
XLOC_002531 NA non-coding upstream 982683 3954090 ~ 3956849 (-)
XLOC_002532 NA non-coding upstream 1061071 4032478 ~ 4046317 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000178_00890259_00896394 MARVELD2A coding CI01000178 null 889761 ~ 896552 (-)