G580184


Basic Information

Item Value
gene id G580184
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 17383971 ~ 17384196 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU662045
GACCAGAGGATCCGGTTAGCAGCCTGGTGCAACCTGTGCCGGTTCCACACTTCTGGCCTCAAGTGCACCTCTCCAGTCCGGTACGTCATGTTtctcctcctcgcactctccctgaagtgcgtgtccccagtccgGTAATTCCTGtacctgctcctcgcactctccctcaagtgcgccttcccagtcaGGTACGTCCTGTGTCTGCTCCCAGCACTCGCccgaagtg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU662045 True 226 lncRNA 0.60 1 17383971 17384196

Neighbor

gene id symbol gene type direction distance location
si:ch211-181l5.2 cl10a coding upstream 47552 17333699 ~ 17336419 (+)
LOC110527408 LOC106574552 coding upstream 52134 17328880 ~ 17331837 (+)
LOC118965348 LOC106574556 coding upstream 57620 17322665 ~ 17326351 (+)
LOC110528799 LOC106575315 coding upstream 123676 17216928 ~ 17260295 (+)
LOC110527406 cc001 coding upstream 186464 17189532 ~ 17197507 (+)
LOC100136600 LOC106574550 coding downstream 84151 17468347 ~ 17473938 (+)
abcb11b LOC106575306 coding downstream 100179 17484375 ~ 17496205 (+)
LOC100136260 LOC100195750 coding downstream 130040 17514236 ~ 17518488 (+)
LOC110527418 LOC106575302 coding downstream 342694 17726890 ~ 17750107 (+)
LOC110528802 LOC106574564 coding downstream 507759 17891955 ~ 17929312 (+)
G580178 NA non-coding upstream 12398 17371134 ~ 17371573 (+)
G580169 NA non-coding upstream 18714 17364974 ~ 17365257 (+)
G580156 NA non-coding upstream 26355 17357301 ~ 17357616 (+)
G580151 NA non-coding upstream 30237 17353385 ~ 17353734 (+)
G580150 NA non-coding upstream 30671 17352994 ~ 17353300 (+)
G580190 NA non-coding downstream 9707 17393903 ~ 17394310 (+)
G580192 NA non-coding downstream 17359 17401555 ~ 17401816 (+)
G580194 NA non-coding downstream 18473 17402669 ~ 17402925 (+)
G580196 NA non-coding downstream 20644 17404840 ~ 17405397 (+)
G580202 NA non-coding downstream 28671 17412867 ~ 17427008 (+)
LOC110527403 LOC106574539 other upstream 286047 17042409 ~ 17097924 (+)
G579566 NA other upstream 564081 16818542 ~ 16819890 (+)
LOC110528786 omp-1 other upstream 920279 16457220 ~ 16463699 (+)
LOC110528915 LOC106574584 other upstream 1335964 16046065 ~ 16048048 (+)
G580179 NA other downstream 14597 17398793 ~ 17400533 (+)
G580315 LOC106575303 other downstream 286079 17670275 ~ 17680668 (+)
G580365 NA other downstream 429146 17813342 ~ 17816848 (+)
G580997 NA other downstream 1108031 18492227 ~ 18492909 (+)
G581976 LOC106581475 other downstream 1592482 18976678 ~ 18976999 (+)

Expression


Co-expression Network