G580190


Basic Information

Item Value
gene id G580190
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 17393903 ~ 17394310 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU662051
acatttgtggcattgtgttgtgtgacaaaactgcacattttagagtggccttttattgtccccagcacaaggtacacctgtgtaatgatcatgctgtttaatcagcttattgatatgccacacctgtcaggtcgatggattatcttggcaaaggagaaatgcttactaaccgggatgtaaacaagtttgtgcacaaaatgtgagagaaataagctttttgtgcatatggaaaatgtctgagatcttttatttcagctcatgaaacatggaaccaacactttacatgttgcatttatattttggttcagtatataTGTAAATGCATGGAGTGTAGCCAGTCTGTAAGTCAACATCCATCCTGTTACAGAATATGATGTTGTCCCAGGTCAATTACATGCCAAACGTGTG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU662051 True 408 lncRNA 0.38 1 17393903 17394310

Neighbor

gene id symbol gene type direction distance location
si:ch211-181l5.2 cl10a coding upstream 57484 17333699 ~ 17336419 (+)
LOC110527408 LOC106574552 coding upstream 62066 17328880 ~ 17331837 (+)
LOC118965348 LOC106574556 coding upstream 67552 17322665 ~ 17326351 (+)
LOC110528799 LOC106575315 coding upstream 133608 17216928 ~ 17260295 (+)
LOC110527406 cc001 coding upstream 196396 17189532 ~ 17197507 (+)
LOC100136600 LOC106574550 coding downstream 74037 17468347 ~ 17473938 (+)
abcb11b LOC106575306 coding downstream 90065 17484375 ~ 17496205 (+)
LOC100136260 LOC100195750 coding downstream 119926 17514236 ~ 17518488 (+)
LOC110527418 LOC106575302 coding downstream 332580 17726890 ~ 17750107 (+)
LOC110528802 LOC106574564 coding downstream 497645 17891955 ~ 17929312 (+)
G580184 NA non-coding upstream 9707 17383971 ~ 17384196 (+)
G580178 NA non-coding upstream 22330 17371134 ~ 17371573 (+)
G580169 NA non-coding upstream 28646 17364974 ~ 17365257 (+)
G580156 NA non-coding upstream 36287 17357301 ~ 17357616 (+)
G580151 NA non-coding upstream 40169 17353385 ~ 17353734 (+)
G580192 NA non-coding downstream 7245 17401555 ~ 17401816 (+)
G580194 NA non-coding downstream 8359 17402669 ~ 17402925 (+)
G580196 NA non-coding downstream 10530 17404840 ~ 17405397 (+)
G580202 NA non-coding downstream 18557 17412867 ~ 17427008 (+)
G580212 NA non-coding downstream 36788 17431098 ~ 17431336 (+)
LOC110527403 LOC106574539 other upstream 295979 17042409 ~ 17097924 (+)
G579566 NA other upstream 574013 16818542 ~ 16819890 (+)
LOC110528786 omp-1 other upstream 930211 16457220 ~ 16463699 (+)
LOC110528915 LOC106574584 other upstream 1345896 16046065 ~ 16048048 (+)
G580179 NA other downstream 4483 17398793 ~ 17400533 (+)
G580315 LOC106575303 other downstream 275965 17670275 ~ 17680668 (+)
G580365 NA other downstream 419032 17813342 ~ 17816848 (+)
G580997 NA other downstream 1097917 18492227 ~ 18492909 (+)
G581976 LOC106581475 other downstream 1582368 18976678 ~ 18976999 (+)

Expression


Co-expression Network