G580475


Basic Information

Item Value
gene id G580475
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 17514375 ~ 17518475 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU662368
GTTTATATTTATTGTACATTTCAAAATTGTTCATTCCTCATAGGGTCAAAGCTTCTTCATTCCATGGGTAAAAGCCCTCTAGGAACCTCCTGAGTAGTCAAGTCAGCAAAGTGATTGACTGCCAGGGTGTAGCTCTCCAGGCCATTCTCTGCTCTCTTGTTGTGTTCCGTCACCATCTTCCTAGTAGCTAGCCAGATCTCCTTGCGCTTAGCTTCCTCCTCGGGGGACGGATAGGTCTTTCCATATTTCACTTTCCATGTTTGAAACTCCTTGTGCACCTCTGTTTCCTCCCCATCTTGAAGCCTTCGTCCTGTAACCTCTGCAGTAGTCTGGTCAGAAAGATGATTCATCCCCATGGTGAAGCTCTCTGAGCCATTCTCTGCCCGCTTGTTGTGTTCCATCACTCTTGCCCTTGTGGCTAACCAGATCTCCTTGCGCTTGGCTTCCTCCTCCGTGGAACCATAGCTCTTCCCGTGTTGCACCTTCCACGTTTCAAACTCTTTATCCACCTCTgcttcctcccctccatctcgaCTGGGAAACACAACCAGAAGTCCTCCTCTAGGAATCTCCTCAGAAGTCATGTCAGAGAAGGAATTCATCCCCATGGTGAAGCTCTCTGAGCCATTCTCTGCTCTCTTGTTGTGTTCCATCACTCTTGCCCTAGTAGCTAACCAGATCTCCTTACGCTTGGCTTCCTCCTCGGTGGAGTTATAGGTCTTACCATTGTGAGTCTTCCACATCTCAAACTCTCTGTCCACCTCTTCTTCCTCAGGTCGAGGCATGGGCAAAAGTCCTCTAGGAACCTCCTCATTAGTCAGGTCAGCAAAGTGATTGACCGCCATGGTGAAGCTCTCTAATCCATTTCCTGCTCTCATATTGTGTTCCATCACCCTCTTCCTCGTCGCTAACCACATCTCCTTGCGTTTGGCTTCCTCTTCGGTAGACGGATAGCTCTTCCCATATTTAACTTTCCATGTCTCAAACTCCTTGTGAACCTCTGCTTCAGAGTCTTCAGGGAGGGGTTTAGACAGCACAGATGATACAGTAACAGCCACCAATAGAAGGAGCACGAGAGACTTCATTCTTCTCCCTGTGATTG

Function

NR:

description
cathepsin K isoform X1

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU662368 True 1102 lncRNA 0.48 13 17514375 17518475

Neighbor

gene id symbol gene type direction distance location
LOC110527417 LOC106575307 coding downstream 32407 17474265 ~ 17481968 (-)
LOC110527413 LOC106575308 coding downstream 52163 17431894 ~ 17462212 (-)
LOC110527414 LOC106574549 coding downstream 84287 17426540 ~ 17430088 (-)
LOC110527411 LOC106574553 coding downstream 89364 17406916 ~ 17425011 (-)
LOC110527416 LOC106575305 coding upstream 17843 17536258 ~ 17662496 (-)
LOC110528801 LOC106575303 coding upstream 147038 17665513 ~ 17714934 (-)
LOC110527420 LOC106575301 coding upstream 236851 17755326 ~ 17803651 (-)
LOC110527099 LOC106575332 coding upstream 305051 17823526 ~ 17827349 (-)
LOC110527421 NA coding upstream 416319 17934794 ~ 17940045 (-)
G580524 NA non-coding downstream 8070 17505794 ~ 17506305 (-)
G580523 NA non-coding downstream 9838 17496727 ~ 17504537 (-)
G580521 NA non-coding downstream 47911 17466120 ~ 17466464 (-)
G580520 NA non-coding downstream 48541 17465589 ~ 17465834 (-)
G580485 NA non-coding downstream 120189 17393955 ~ 17394186 (-)
G580526 NA non-coding upstream 5552 17524027 ~ 17524257 (-)
G580527 LOC100194703 non-coding upstream 7790 17526265 ~ 17526528 (-)
G580528 LOC100194703 non-coding upstream 8114 17526589 ~ 17526814 (-)
G580536 NA non-coding upstream 16723 17535198 ~ 17535418 (-)
G580537 NA non-coding upstream 16954 17535429 ~ 17535675 (-)
G580487 NA other downstream 113839 17397857 ~ 17400536 (-)
LOC110527396 LOC106574529 other downstream 713689 16797680 ~ 16800686 (-)
LOC110528867 LOC106575374 other downstream 953230 16559930 ~ 16635251 (-)
G579278 NA other downstream 1048841 16464942 ~ 16465534 (-)
LOC110528887 LOC106574501 other downstream 1193611 16316980 ~ 16320794 (-)
G581089 LOC106575297 other upstream 524452 18042927 ~ 18043380 (-)
G581174 LOC101077481 other upstream 698683 18217158 ~ 18235038 (-)
G583661 NA other upstream 2697174 20215649 ~ 20249985 (-)
otos2 LOC106575250 other upstream 3254392 20772867 ~ 20778065 (-)
LOC110527470 LOC103366558 other upstream 3320013 20838415 ~ 20839399 (-)

Expression


Co-expression Network