G580253


Basic Information

Item Value
gene id G580253
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 17542992 ~ 17543733 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU662123
caacaagagggcttaatTGGAGTCTATTTCTTCGGAGCCCAGACCTATATAAACtaacttaactggctgaggtaggctatgAGCCTTGACAGCCTAATAGAAGTAGGATTTTAATTAGGCCTACTTACAATTGCAACTGGTCAAAAATGTAGCATCctacataaaataataatttaaagaaGAAAAGTCTGCACATTcgaactaaaacaatgtaactaataattaaaagtaaatcccaaactctaaaagtaattggaaaggtagatacaaatgATGTGCGGaattgtggttacaataaagaatgtagCACGTCATGCAAATGtttcctattagcaggacaatatactttTTACAGCCCGGCTACTGTTGTGAAAATCCCTCAACTTGCATTGTATTCAATGCTAGAGTACTctaaagtgttacatttctaactcaaaacagcagtacagcatttcttcatcaacatctttatgctttcgttaatacaataaaataacaagaaAAAAGACATTCAAACGCAGATATttatattaaatacatttgatctTCCCCCCAGCTCCAGGACCACAGGTAAAACCTTGCTAAGATGATCAATGTATTTGTTCCATTGTTGTATCGTCAATTTCTCTCGCCAAAACATCTCGATGGTCTTGACCAGTTCATCTTTGCCTGTCGGCTTGGCAGAGATACGGATTCATGTTTTCAGTTGATGCCTAACAAGTTCGATCGGGTTGAAATCAGG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU662123 True 742 lncRNA 0.36 1 17542992 17543733

Neighbor

gene id symbol gene type direction distance location
LOC100136260 LOC100195750 coding upstream 24504 17514236 ~ 17518488 (+)
abcb11b LOC106575306 coding upstream 46787 17484375 ~ 17496205 (+)
LOC100136600 LOC106574550 coding upstream 69054 17468347 ~ 17473938 (+)
LOC110527410 LOC106575311 coding upstream 144974 17372378 ~ 17398018 (+)
si:ch211-181l5.2 cl10a coding upstream 206573 17333699 ~ 17336419 (+)
LOC110527418 LOC106575302 coding downstream 183157 17726890 ~ 17750107 (+)
LOC110528802 LOC106574564 coding downstream 348222 17891955 ~ 17929312 (+)
LOC110527422 LOC106575297 coding downstream 458600 18002333 ~ 18079999 (+)
LOC110527424 LOC106575296 coding downstream 552724 18096457 ~ 18107236 (+)
gcg2 gcg2 coding downstream 565057 18108790 ~ 18111651 (+)
G580250 NA non-coding upstream 3132 17539613 ~ 17539860 (+)
G580246 NA non-coding upstream 13380 17529404 ~ 17529612 (+)
G580212 NA non-coding upstream 111656 17431098 ~ 17431336 (+)
G580202 NA non-coding upstream 115984 17412867 ~ 17427008 (+)
G580196 NA non-coding upstream 137595 17404840 ~ 17405397 (+)
G580254 NA non-coding downstream 496 17544229 ~ 17544434 (+)
G580259 NA non-coding downstream 6599 17550332 ~ 17550888 (+)
G580260 NA non-coding downstream 7759 17551492 ~ 17551693 (+)
G580263 NA non-coding downstream 18067 17561800 ~ 17562206 (+)
G580264 NA non-coding downstream 21711 17565444 ~ 17566443 (+)
G580179 NA other upstream 142459 17398793 ~ 17400533 (+)
LOC110527403 LOC106574539 other upstream 445068 17042409 ~ 17097924 (+)
G579566 NA other upstream 723102 16818542 ~ 16819890 (+)
LOC110528786 omp-1 other upstream 1079300 16457220 ~ 16463699 (+)
G580315 LOC106575303 other downstream 126542 17670275 ~ 17680668 (+)
G580365 NA other downstream 269609 17813342 ~ 17816848 (+)
G580997 NA other downstream 948494 18492227 ~ 18492909 (+)
G581976 LOC106581475 other downstream 1432945 18976678 ~ 18976999 (+)
LOC110528807 LOC106574429 other downstream 2474122 20017855 ~ 20028775 (+)

Expression


Co-expression Network