Gene
RNA
| Item | Value |
|---|---|
| gene id | G580272 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048571.1 |
| NCBI id | CM023225.2 |
| chromosome length | 90918291 |
| location | 17583349 ~ 17583629 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| Transposable element Tcb1 transposase |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU662142 | True | 281 | lncRNA | 0.49 | 1 | 17583349 | 17583629 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC100136260 | LOC100195750 | coding | upstream | 64861 | 17514236 ~ 17518488 (+) |
| abcb11b | LOC106575306 | coding | upstream | 87144 | 17484375 ~ 17496205 (+) |
| LOC100136600 | LOC106574550 | coding | upstream | 109411 | 17468347 ~ 17473938 (+) |
| LOC110527410 | LOC106575311 | coding | upstream | 185331 | 17372378 ~ 17398018 (+) |
| si:ch211-181l5.2 | cl10a | coding | upstream | 246930 | 17333699 ~ 17336419 (+) |
| LOC110527418 | LOC106575302 | coding | downstream | 143261 | 17726890 ~ 17750107 (+) |
| LOC110528802 | LOC106574564 | coding | downstream | 308326 | 17891955 ~ 17929312 (+) |
| LOC110527422 | LOC106575297 | coding | downstream | 418704 | 18002333 ~ 18079999 (+) |
| LOC110527424 | LOC106575296 | coding | downstream | 512828 | 18096457 ~ 18107236 (+) |
| gcg2 | gcg2 | coding | downstream | 525161 | 18108790 ~ 18111651 (+) |
| G580270 | NA | non-coding | upstream | 4173 | 17578958 ~ 17579176 (+) |
| G580269 | NA | non-coding | upstream | 4452 | 17578177 ~ 17578897 (+) |
| G580264 | NA | non-coding | upstream | 16906 | 17565444 ~ 17566443 (+) |
| G580263 | NA | non-coding | upstream | 21143 | 17561800 ~ 17562206 (+) |
| G580260 | NA | non-coding | upstream | 31656 | 17551492 ~ 17551693 (+) |
| G580279 | NA | non-coding | downstream | 9995 | 17593624 ~ 17593985 (+) |
| G580280 | NA | non-coding | downstream | 10912 | 17594541 ~ 17594826 (+) |
| G580284 | NA | non-coding | downstream | 16555 | 17600184 ~ 17600388 (+) |
| G580291 | NA | non-coding | downstream | 27178 | 17610807 ~ 17611028 (+) |
| G580298 | NA | non-coding | downstream | 39613 | 17623242 ~ 17623455 (+) |
| G580179 | NA | other | upstream | 182816 | 17398793 ~ 17400533 (+) |
| LOC110527403 | LOC106574539 | other | upstream | 485425 | 17042409 ~ 17097924 (+) |
| G579566 | NA | other | upstream | 763459 | 16818542 ~ 16819890 (+) |
| LOC110528786 | omp-1 | other | upstream | 1119657 | 16457220 ~ 16463699 (+) |
| G580315 | LOC106575303 | other | downstream | 86646 | 17670275 ~ 17680668 (+) |
| G580365 | NA | other | downstream | 229713 | 17813342 ~ 17816848 (+) |
| G580997 | NA | other | downstream | 908598 | 18492227 ~ 18492909 (+) |
| G581976 | LOC106581475 | other | downstream | 1393049 | 18976678 ~ 18976999 (+) |
| LOC110528807 | LOC106574429 | other | downstream | 2434226 | 20017855 ~ 20028775 (+) |
