G580284


Basic Information

Item Value
gene id G580284
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 17600184 ~ 17600388 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU662157
tccctcctctcatatCCCCGTCTCCTCTCTTGGCAGCGTTGGCTCTGGAGTCCTTTTTCATTTCAACTTCAATTACCGCTGCCTTCAAGGCAGGAGTCCCTCCGCACTGCGCATTTTCAGGTGTCTCTGAAAGACGATCCTCGCTCTCTAGCAGCGCACACACTGATaatagcatacacacacaccaaagtccccccccccacac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU662157 True 205 lncRNA 0.54 1 17600184 17600388

Neighbor

gene id symbol gene type direction distance location
LOC100136260 LOC100195750 coding upstream 81696 17514236 ~ 17518488 (+)
abcb11b LOC106575306 coding upstream 103979 17484375 ~ 17496205 (+)
LOC100136600 LOC106574550 coding upstream 126246 17468347 ~ 17473938 (+)
LOC110527410 LOC106575311 coding upstream 202166 17372378 ~ 17398018 (+)
si:ch211-181l5.2 cl10a coding upstream 263765 17333699 ~ 17336419 (+)
LOC110527418 LOC106575302 coding downstream 126502 17726890 ~ 17750107 (+)
LOC110528802 LOC106574564 coding downstream 291567 17891955 ~ 17929312 (+)
LOC110527422 LOC106575297 coding downstream 401945 18002333 ~ 18079999 (+)
LOC110527424 LOC106575296 coding downstream 496069 18096457 ~ 18107236 (+)
gcg2 gcg2 coding downstream 508402 18108790 ~ 18111651 (+)
G580280 NA non-coding upstream 5358 17594541 ~ 17594826 (+)
G580279 NA non-coding upstream 6199 17593624 ~ 17593985 (+)
G580272 NA non-coding upstream 16555 17583349 ~ 17583629 (+)
G580270 NA non-coding upstream 21008 17578958 ~ 17579176 (+)
G580269 NA non-coding upstream 21287 17578177 ~ 17578897 (+)
G580291 NA non-coding downstream 10419 17610807 ~ 17611028 (+)
G580298 NA non-coding downstream 22854 17623242 ~ 17623455 (+)
G580320 NA non-coding downstream 44149 17644537 ~ 17644838 (+)
G580321 NA non-coding downstream 44655 17645043 ~ 17645305 (+)
G580317 NA non-coding downstream 62304 17662692 ~ 17663497 (+)
G580179 NA other upstream 199651 17398793 ~ 17400533 (+)
LOC110527403 LOC106574539 other upstream 502260 17042409 ~ 17097924 (+)
G579566 NA other upstream 780294 16818542 ~ 16819890 (+)
LOC110528786 omp-1 other upstream 1136492 16457220 ~ 16463699 (+)
G580315 LOC106575303 other downstream 69887 17670275 ~ 17680668 (+)
G580365 NA other downstream 212954 17813342 ~ 17816848 (+)
G580997 NA other downstream 891839 18492227 ~ 18492909 (+)
G581976 LOC106581475 other downstream 1376290 18976678 ~ 18976999 (+)
LOC110528807 LOC106574429 other downstream 2417467 20017855 ~ 20028775 (+)

Expression


Co-expression Network