G580334 (LOC106575301)


Basic Information

Item Value
gene id G580334
gene name LOC106575301
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 17687465 ~ 17757779 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU662209
CCTGCGAGCGGAGGTATGGTGGTGAATGAATGCAAAGCTCGCCGTAGCGGGGAAGTGAGGTAACTAAACCAGGCTCCATGAGAGTCGCAAAATAAATCCTCTTCTTTTTCTCCGGCCCTGTCTGCAGTCATGTTTCCCAGTAAGGGAGTGCTGCTCttggatcagctttctccattcaaatctttcCTTGACATtataattattccacaatactgacaatggatcagctcctagagagatattaccaCCTACGGCTACAAATATTGAGGAGGCTTATTctaatgaagggagagagagagagagagagagagagagagagagagagagagagagcgagagagcgagagagagagagcgagagagagagagattaaaataTATCTGTCGGACACATTGCTTTGTGACAATGAAGGTCTACGAAGATGAAGATCTCATTGAATCACTCCCAATGGATCTGTTGACGTACATTCAGGATCTCTGTGTCCGTGGGTGTGTTCATAGAAACAGCGTGGGGAGAACAACAGCAATTCATATAGAGGTACAAGATATATCTTTGCCAAGTGTAAACGATGATAGGTTGTGGAATTAAGCGTGTGCATAATGTAACGTTAACGTGATAAATAACCTTGCCTGAGATCTGAAGACCTGGGTTAGCTCCCCGAGCTAAGTCTCAGACCTTACCTCAGTGGGCTAGCACAGTCTTGTGGTGTGCAGGAGACCCGGTTAGttacatatacagtatctatGCTTATTCCCAGAGGGATACACGAAAACTGCGGCCTGAGCAGTTCTGGGAGTAACAAAACGCATGTGGTGTTAGTATTGGAACATGGATTTGTTAAGTAGCTGAGTTTTGCTGTACATGGTGTTCTTAAAACCGTGAAAAGCAGTGGACACATTCTCACAATTACACGATAAAACATTCCTTAccataaaaaaaaagaagttatacAAAAATGCAAGAACCTTAAGTAACACGGCGACCGTTATTCAAGACACTGGATGTATGATGGTAGCAGCAGCACTAGCTACAGAAAACTTCACAGTATACACAGGTGTGTCAGATAGTAACACTCAACAGAAAATCACAAGCGGTTTCGCAGCGGCTTTTTGAGTCGCCGTCTTTCACTTACTCCTGGCAGTGATACATAGCAATAATCTTCCCCTGCCTTGTTACTATGTAACCCCCTGGAACAGTCCCCTTAAATGGCTCCAAACCTGCTCTCTGGCCTCAGCCTTAGCTAGCTACATATCAGTTTGGCCTAGCAcccaacaccaccacacaccctaCACCAACACATTAGCATTTAGCATACATCGATAATCCAAAACTGTAAACAAGTTTTCCTTCAAAGCAAATGTCTCAGTACTCATCATTTCTCCTCTTGTTCACTTGTTTATTTTCCTCTTagatctttctctctgtcctctttctccctctgttctttCTCATATTTGTCCTTTTCCGACTTTGTGGCACTGTTGTACGAAGGCAGCGAGGCGGTGGAGGACGTCATGTCCATTTTCTCTGTGGAGGTGGAGTTGTCCGCAAACTTCCCAATCACCAGCACCTCCTTGTCCTCCAGCTCGCACATCATGCTGCCTTTAGGCTGCTCCTTGTAGAGCTCTGCTGCTTTCTTCAGGGCGAGTCGGGCCAGGTAGCGCCTGAAGGACCTCTGGATCACCACGGCAGACATGTCTTCCTGCTTGCGCCGCAAGGTACTGGTGATGGGTTCGTAGGATACTTTGGAGGGATTGGAGGCCATGAAGCGCTCCTCCATCTGGCCCCGGAGGAGGTCCAAGCCTTCGCCTTCTCCCAGGACACGCTTGGTGAAGGCAAACAGGATGTCAAGGCAGTGGATGCGCTCCCCGCTGACCATGGGCAGATCCATTTTGATCAGCTGGATGTGGTTGGGCTTGGCCATTCGCAGCGGTGGGTCCAAAGCGTCTGCAAAGTCCGACAGCTTGTCGTACTCCACGAACTGCGTGGCGTCCGGGTCGAAGCGCTCCCACACCTCGTAGAACATCTCAAAGTCGTCCTCGCTCAGCGGCTCGGCCGACTCCTCGGTGGCCACGCTGAAGTTCTCCAGGATGACAGCGATGTACATGTTGACCACGATGAGGAAACAGATGATGATGTAGCTGACGAAAAAGAACATGGCCACTGGCGGGTTGCCGCAGTTTCCCCGGTACAAGGTGCCCGGGTGCTCCATCTGGCTGTCACAGTCGGGCTCCTTCTTGTTGAGGATGGGCGCCAGGAGGCCGTCCCAGCCCGCTGACGTGGTGATCTGGAACAGGCAGAGCATGCTGTTGCCGAACGTCTCGAAGTTGAACATGTCGTCGATTCCCGCCTCGTGCTTGACGTAGGCGAAGTTGGACATGCCGAAGATGGCGTAGATGAACATGACCAGGAAGAGCAGGAGGCCAATGTTAAACAGGGCAGGAAGTGACATCATCAAGGCGAACAAAAGCGTCCGGATGCCCTTGGCGCCCTTGATGAGACGGAGGATGCGGCCGATTCTGGCAAGTCGGATGACTCGGAATAACGTTGGGGAAACAAAGTACTTCTCAATCAATTCTGATAAAAAC
>TU662208
TCGGTTTTATTTTAGAAATCTTGATTTTGTGTTTTGTGGTCACATCTTTGGCTCTAACAAAAATGTCACTTGTCACacatttgcaaatgtatacatttCAGTGTAACATGAAGTTCAACCACATGGATGACCCCTTCAAACCAGATATACAGCAATATCCAGCAATCGTCATACCTTTCTCTTTTAAGCTATGCTCTATCAGAAAGTAACAGGTGTGTAAAAACAAATATGCTCTTTATTCTTTAGAACGTTTCCATTCATGTTAGCAGATGAGCTGATACTAGTCCTGACCTGCATGCCCTTCACTAACACACTACCTGAAGGAAAAATGGCTGCCGATTGCTTTATGGTTCATATCTACAGAAATGTGGACCATACACGTGTTTCATGTGTCAATGTGTGCAGAATGTaaaacaagttgtagaaaaatggcaacctaaacCTTACTTCAAAAAGCAACAGTAGCTACAGTAGAAGCACTATTTATGATACTTGTAATACAAGTAAACTGTAGACCCCCagtcacacacacgctcacataaTACCCTTTGGGGGTGGCCATTAAAAGCTAAAAAAGTGCACTTACATCAAATGGATGTGTTATGCATACTGTGGGTCTATATAGTACACCATACTATTTATAAATCGAACCAAATCACTATGTTGAAAGAATCAGGCTTTGAATTAAAGTCATTAATGAACTATGAGCACAGTGGGCAGTACAGATGAGTGCTAAACTCAATGCACATATTATAATGGAGTTAGACACCGTTGAAAAAGACCATCAATGTGTTCCCTTTATTATATTTTTGTTAGTCACCTTTCTTTACAAGAGCGTTTCGACAGAAacaaggagtggagagagagagagagagagagagagagagagagagcgagagagcgagagagagagagcgagagagagagagattaaaataTATCTGTCGGACACATTGCTTTGTGACAATGAAGGTCTACGAAGATGAAGATCTCATTGAATCACTCCCAATGGATCTGTTGACGTACATTCAGGATCTCTGTGTCCGTGGGTGTGTTCATAGAAACAGCGTGGGGAGAACAACAGCAATTCATATAGAGGTACAAGATATATCTTTGCCAAGTGTAAACGATGATAGGTTGTGGAATTAAGCGTGTGCATAATGTAACGTTAACGTGATAAATAACCTTGCCTGAGATCTGAAGACCTGGGTTAGCTCCCCGAGCTAAGTCTCAGACCTTACCTCAGTGGGCTAGCACAGTCTTGTGGTGTGCAGGAGACCCGGTTAGttacatatacagtatctatGCTTATTCCCAGAGGGATACACGAAAACTGCGGCCTGAGCAGTTCTGGGAGTAACAAAACGCATGTGGTGTTAGTATTGGAACATGGATTTGTTAAGTAGCTGAGTTTTGCTGTACATGGTGTTCTTAAAACCGTGAAAAGCAGTGGACACATTCTCACAATTACACGATAAAACATTCCTTAccataaaaaaaaagaagttatacAAAAATGCAAGAACCTTAAGTAACACGGCGACCGTTATTCAAGACACTGGATGTATGATGGTAGCAGCAGCACTAGCTACAGAAAACTTCACAGTATACACAGGTGTGTCAGATAGTAACACTCAACAGAAAATCACAAGCGGTTTCGCAGCGGCTTTTTGAGTCGCCGTCTTTCACTTACTCCTGGCAGTGATACATAGCAATAATCTTCCCCTGCCTTGTTACTATGTAACCCCCTGGAACAGTCCCCTTAAATGGCTCCAAACCTGCTCTCTGGCCTCAGCCTTAGCTAGCTACATATCAGTTTGGCCTAGCAcccaacaccaccacacaccctaCACCAACACATTAGCATTTAGCATACATCGATAATCCAAAACTGTAAACAAGTTTTCCTTCAAAGCAAATGTCTCAGTACTCATCATTTCTCCTCTTGTTCACTTGTTTATTTTCCTCTTagatctttctctctgtcctctttctccctctgttctttCTCATATTTGTCCTTTTCCGACTTTGTGGCACTGTTGTACGAAGGCAGCGAGGCGGTGGAGGACGTCATGTCCATTTTCTCTGTGGAGGTGGAGTTGTCCGCAAACTTCCCAATCACCAGCACCTCCTTGTCCTCCAGCTCGCACATCATGCTGCCTTTAGGCTGCTCCTTGTAGAGCTCTGCTGCTTTCTTCAGGGCGAGTCGGGCCAGGTAGCGCCTGAAGGACCTCTGGATCACCACGGCAGACATGTCTTCCTGCTTGCGCCGCAAGGTACTGGTGATGGGTTCGTAGGATACTTTGGAGGGATTGGAGGCCATGAAGCGCTCCTCCATCTGGCCCCGGAGGAGGTCCAAGCCTTCGCCTTCTCCCAGGACACGCTTGGTGAAGGCAAACAGGATGTCAAGGCAGTGGATGCGCTCCCCGCTGACCATGGGCAGATCCATTTTGATCAGCTGGATGTGGTTGGGCTTGGCCATTCGCAGCGGTGGGTCCAAAGCGTCTGCAAAGTCCGACAGCTTGTCGTACTCCACGAACTGCGTGGCGTCCGGGTCGAAGCGCTCCCACACCTCGTAGAACATCTCAAAGTCGTCCTCGCTCAGCGGCTCGGCCGACTCCTCGGTGGCCACGCTGAAGTTCTCCAGGATGACAGCGATGTACATGTTGACCACGATGAGGAAACAGATGATGATGTAGCTGACGAAAAAGAACATGGCCACTGGCGGGTTGCCGCAGTTTCCCCGGTACAAGGTGCCCGGGTGCTCCATCTGGCTGTCACAGTCGGGCTCCTTCTTGTTGAGGATGGGCGCCAGGAGGCCGTCCCAGCCCGCTGACGTGGTGATCTGGAACAGGCAGAGCATGCTGTTGCCGAACGTCTCGAAGTTGAACATGTCGTCGATTCCCGCCTCGTGCTTGACGTAGGCGAAGTTGGACATGCCGAAGATGGCGTAGATGAACATGACCAGGAAGAGCAGGAGGCCAATGTTAAACAGGGCAGGAAGTGACATCATCAAGGCGAACAAAAGCGTCCGGATGCCCTTGGCGCCCTTGATGAGACGGAGGATGCGGCCGATTCTGGCAAGTCGGATGACTCGGAATAACGTTGGGGAAACAAAGTACTTCTCAATCAATTCTGATAAAAAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU662209 False 2589 lncRNA 0.49 3 17687465 17757779
TU662208 True 3149 lncRNA 0.46 2 17754547 17757779

Neighbor

gene id symbol gene type direction distance location
LOC100136260 LOC100195750 coding upstream 168977 17514236 ~ 17518488 (+)
abcb11b LOC106575306 coding upstream 191260 17484375 ~ 17496205 (+)
LOC100136600 LOC106574550 coding upstream 213527 17468347 ~ 17473938 (+)
LOC110527410 LOC106575311 coding upstream 289447 17372378 ~ 17398018 (+)
si:ch211-181l5.2 cl10a coding upstream 351046 17333699 ~ 17336419 (+)
LOC110528802 LOC106574564 coding downstream 134176 17891955 ~ 17929312 (+)
LOC110527422 LOC106575297 coding downstream 244554 18002333 ~ 18079999 (+)
LOC110527424 LOC106575296 coding downstream 338678 18096457 ~ 18107236 (+)
gcg2 gcg2 coding downstream 351011 18108790 ~ 18111651 (+)
LOC110528803 adcy10 coding downstream 353936 18111715 ~ 18127563 (+)
G580317 NA non-coding upstream 23968 17662692 ~ 17663497 (+)
G580321 NA non-coding upstream 42160 17645043 ~ 17645305 (+)
G580320 NA non-coding upstream 42627 17644537 ~ 17644838 (+)
G580298 NA non-coding upstream 64010 17623242 ~ 17623455 (+)
G580291 NA non-coding upstream 76437 17610807 ~ 17611028 (+)
G580380 NA non-coding downstream 15941 17773720 ~ 17774340 (+)
G580363 NA non-coding downstream 61853 17819632 ~ 17821718 (+)
G580457 NA non-coding downstream 148738 17906517 ~ 17907214 (+)
G580462 NA non-coding downstream 156007 17913786 ~ 17914011 (+)
G580315 LOC106575303 other upstream 6797 17670275 ~ 17680668 (+)
G580179 NA other upstream 286932 17398793 ~ 17400533 (+)
LOC110527403 LOC106574539 other upstream 589541 17042409 ~ 17097924 (+)
G579566 NA other upstream 867575 16818542 ~ 16819890 (+)
G580365 NA other downstream 55563 17813342 ~ 17816848 (+)
G580997 NA other downstream 734448 18492227 ~ 18492909 (+)
G581976 LOC106581475 other downstream 1218899 18976678 ~ 18976999 (+)
LOC110528807 LOC106574429 other downstream 2260076 20017855 ~ 20028775 (+)
G583605 NA other downstream 2481132 20238911 ~ 20239797 (+)

Expression


Co-expression Network