G580457


Basic Information

Item Value
gene id G580457
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 17906517 ~ 17907214 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU662348
AAAGagatgagctcagccatccacataaagagatgagctcagccatccacataaagagatgagctcagccatccacataaagagatgagctcagccatccacataaagagatgagctcagccatccacataaagagatgagctcagccatccacatgaagagacgagctcagccatccacatgaagagatgagctcagccatccacatgaagagacgagctcagccatccacataaagagatgagctcagccatccacatgaagagacgagctcagccatccacatgaagagatgagctcagccatccacataaagagatgagctcagccatccacataaagagatgagctcagccatccacataaagagatgagctcagccatccacataaagagatgagctcagccatccacataaagagatgTGCGTGCAATTATTTAACTGGGAACTATTTCACAGATTATTACATGTGTCGTGTAGCCCAATGTACATGTTCATTGAACACTTGCtccctttaataatgtttacataatgttttacccatttcatatctatatactgtTTCTAGTCAAg

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU662348 True 574 lncRNA 0.44 2 17906517 17907214

Neighbor

gene id symbol gene type direction distance location
LOC110527418 LOC106575302 coding upstream 156410 17726890 ~ 17750107 (+)
LOC100136260 LOC100195750 coding upstream 388029 17514236 ~ 17518488 (+)
abcb11b LOC106575306 coding upstream 410312 17484375 ~ 17496205 (+)
LOC100136600 LOC106574550 coding upstream 432579 17468347 ~ 17473938 (+)
LOC110527410 LOC106575311 coding upstream 508499 17372378 ~ 17398018 (+)
LOC110527422 LOC106575297 coding downstream 95119 18002333 ~ 18079999 (+)
LOC110527424 LOC106575296 coding downstream 189243 18096457 ~ 18107236 (+)
gcg2 gcg2 coding downstream 201576 18108790 ~ 18111651 (+)
LOC110528803 adcy10 coding downstream 204501 18111715 ~ 18127563 (+)
LOC110527430 gemin8 coding downstream 295437 18202651 ~ 18204833 (+)
G580363 NA non-coding upstream 84799 17819632 ~ 17821718 (+)
G580380 NA non-coding upstream 132177 17773720 ~ 17774340 (+)
G580334 LOC106575301 non-coding upstream 148738 17687465 ~ 17757779 (+)
G580317 NA non-coding upstream 243020 17662692 ~ 17663497 (+)
G580462 NA non-coding downstream 6572 17913786 ~ 17914011 (+)
LOC110528802 LOC106574564 non-coding downstream 18465 17891955 ~ 17929312 (+)
G580781 NA non-coding downstream 68700 17975914 ~ 17976185 (+)
G580802 NA non-coding downstream 80057 17987271 ~ 17987849 (+)
G580803 NA non-coding downstream 81008 17988222 ~ 17988437 (+)
G580365 NA other upstream 89669 17813342 ~ 17816848 (+)
G580315 LOC106575303 other upstream 225849 17670275 ~ 17680668 (+)
G580179 NA other upstream 505984 17398793 ~ 17400533 (+)
si:ch211-181l5.2 cl10a other upstream 572388 17333699 ~ 17336419 (+)
LOC110527403 LOC106574539 other upstream 808593 17042409 ~ 17097924 (+)
G580997 NA other downstream 585013 18492227 ~ 18492909 (+)
G581976 LOC106581475 other downstream 1069464 18976678 ~ 18976999 (+)
LOC110528807 LOC106574429 other downstream 2110641 20017855 ~ 20028775 (+)
G583605 NA other downstream 2331697 20238911 ~ 20239797 (+)
G584643 NA other downstream 3173614 21080828 ~ 21082615 (+)

Expression


Co-expression Network