XLOC_025209 (znf385c)


Basic Information

Item Value
gene id XLOC_025209
gene name znf385c
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 17744339 ~ 17860047 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049782
CGAGCGTCTGTAACGATCCCTCCGACACATCAACTCCAGGAGCCGAAACAAGAGTGAGAGACTCATCGAAGAGTGAGAAATCTGAGAGGAAAAGACATATATCGAGCTGTCGGAGAGTATTTAACCATTTTGATTGTGCTGATTTctcgtttccttttttttttttttttttttggttggttggtttctcTTTTTTGGGGGGAAACAAGGATAAGCCTACCTTTTCACAACATGCTGATCGGTACGGCTGCTCAGGggagccccctgctggcctcattacCAATGCAGGGTCGTCCGCTGCAGACGCCGCTGGACCTCAAACACTTCCTGCCCTTCCGGCTGAGCGGATCCTCCCCGCTCAGCCTCTTCCCAAACTTCAACAACATGGACCCAGTGCAGAAGGCCGTGATCAACCATACGTTTGGTGTTCCTCAGTCCCTGAAGAAAAAACAGGTCATCTCATGCAATATCTGCCACCTGCGCTTCAACTCCACGAATCAGGCCGAGGCTCATTATAAAGGCCATAAACATGCTCGCAAGCTGAAGGCATTGGAGGCTCAGAAGAACAAACAGCAGAGACGACAACAGGACAACTCCCACCACAACCGAGAGCGAGAgaaggacagagagagagataaagaaagagagagagtgaaggCCAGCGCTCCAGATCCACCACCAGCCCTGCTGGACGACACCGCCATCGAAGGAACTGCTGTCAGCGACCCGGAGTCTGCGCTACGAGTGGACGACGCTCACTGCAGTTCAGTGGTGCTGACGCCCATATCAGAGGTTTCGTCTGCTGACCTGTGCGCATCCTCTCCTCACTCGCAGCACCCCGACGCTCTCCTGGAACCCAGCGGAGACACAAGCCCTCCTCCACAGGACAGCCCTGCAGCAGACACACCGGCAGAGAAGGAGCCCAAAAAGTCCAAACAACACCTGCACTGCCCCATCTGCAAAGTCACGGTCAACTCCAGCATTCAGATGGAGGCTCACAATAGTGGCACCAAGCATAAACtaatgatggatggacagagtgTGTTGCCACGGAGACGAGGGAAAGCGATGTCATCCCGCCCTTCGTGTAAAAGCAAGCGATTGGCCAGCAAGGGAAGTCTGGGCGTGGCCAGCAAGAGCTTCTACTGTGAAGTTTGCGAGATCCATGTTAACTCTGAGACTCAACTCAGCCAGCACATGAACAGTCGAAGGCATAAGGATAGACTGGCTGGGAAACCTCCAAAACCCAAGTTCAACCCTCATGCCAAGAGTCAGCCTACCTCAACCGTGTCGGGTGTCCGATGGAACGGTTATGCGGGCGGCGCAGTGTCTGCCATGAAGAAAGTTATCAGCCAATGCAATCTCTCCTCTCTGTCCTCACAGactaAACTTGTTCTACAGAAGCAATTGACAAAAAATTTGACCGCCAGCTTCCTGCCCACCCCCTTAACTCCACCCACCCTCTGCACCGTTGCGGCCAATCCTCTCGCACTGCGACACCCGCCGGGCACTACTTTCATTCAGACGCCCATCCTCGGCCCAGCCCTCTTTAGGCCAGCACCAGGACCTCTGAGAGCCACACACACTCCCATAATATTCTCCCCCTATTGA
>TCONS_00049783
attaaatttttttgcaggGTGAACTGCCCCAGTTGAGCTTTATGTCTAGCCACGCCCCTGATTTCATGGTAGATCATTAATTGTGCAATGATAAAATAAGTGACTGGATCCTGCATTGTGTATCTCCATTCTCATCATTGATCCTGACGTTTGTGTTCTAATAGCATAATTGAACTGCTGCCCTGTGGTCATCAGTGATTTAGTCTAATGCGTGCTGCTCTTTTGTCTCTTTTCTTCTGCTCAGGTACGGCTGCTCAGGggagccccctgctggcctcattacCAATGCAGGGTCGTCCGCTGCAGACGCCGCTGGACCTCAAACACTTCCTGCCCTTCCGGCTGAGCGGATCCTCCCCGCTCAGCCTCTTCCCAAACTTCAACAACATGGACCCAGTGCAGAAGGCCGTGATCAACCATACGTTTGGTGTTCCTCAGTCCCTGAAGAAAAAACAGGTCATCTCATGCAATATCTGCCACCTGCGCTTCAACTCCACGAATCAGGCCGAGGCTCATTATAAAGGCCATAAACATGCTCGCAAGCTGAAGGCATTGGAGGCTCAGAAGAACAAACAGCAGAGACGACAACAGGACAACTCCCACCACAACCGAGAGCGAGAgaaggacagagagagagataaagaaagagagagagtgaaggCCAGCGCTCCAGATCCACCACCAGCCCTGCTGGACGACACCGCCATCGAAGGAACTGCTGTCAGCGACCCGGAGTCTGCGCTACGAGTGGACGACGCTCACTGCAGTTCAGTGGTGCTGACGCCCATATCAGAGGTTTCGTCTGCTGACCTGTGCGCATCCTCTCCTCACTCGCAGCACCCCGACGCTCTCCTGGAACCCAGCGGAGACACAAGCCCTCCTCCACAGGACAGCCCTGCAGCAGACACACCGGCAGAGAAGGAGCCCAAAAAGTCCAAACAACACCTGCACTGCCCCATCTGCAAAGTCACGGTCAACTCCAGCATTCAGATGGAGGCTCACAATAGTGGCACCAAGCATAAACtaatgatggatggacagagtgTGTTGCCACGGAGACGAGGGAAAGCGATGTCATCCCGCCCTTCGTGTAAAAGCAAGCGATTGGCCAGCAAGGGAAGTCTGGGCGTGGCCAGCAAGAGCTTCTACTGTGAAGTTTGCGAGATCCATGTTAACTCTGAGACTCAACTCAGCCAGCACATGAACAGTCGAAGGCATAAGGATAGACTGGCTGGGAAACCTCCAAAACCCAAGTTCAACCCTCATGCCAAGAGTCAGCCTACCTCAACCGTGTCGGTGAGCACACACAGGAACACACACTTGTCACATTCTTGCAGGAGATGTAAATTTGTGGGTGCTTTGTGCAGAGAAATCTTGTCTTTTGTTTgtgtaattatgcattcagaggCTAATGACTCGGCCTATTACCAGATTTTTGAGCCCGTCATTGTctacttatttacttatgtaaatgtgttcaaatatatatttattcagtgttcGTATTCATTTCAGTactattattga
>TCONS_00049784
GTCATGTAATGTTTGAAGAATTCTAGAGGAAAATTTGGAGGAAAGTGTTAACAGTAAAAAAGTTAGGAATTGTTCAattaattgcattatttaaaagttttttttaaatcaatggcTCTGTCTCTCTTCAGCTGCTGTCAGCGACCCGGAGTCTGCGCTACGAGTGGACGACGCTCACTGCAGTTCAGTGGTGCTGACGCCCATATCAGAGGTTTCGTCTGCTGACCTGTGCGCATCCTCTCCTCACTCGCAGCACCCCGACGCTCTCCTGGAACCCAGCGGAGACACAAGCCCTCCTCCACAGGACAGCCCTGCAGCAGACACACCGGCAGAGAAGGAGCCCAAAAAGTCCAAACAACACCTGCACTGCCCCATCTGCAAAGTCACGGTCAACTCCAGCATTCAGATGGAGGCTCACAATAGTGGCACCAAGCATAAACtaatgatggatggacagagtgTGTTGCCACGGAGACGAGGGAAAGCGATGTCATCCCGCCCTTCGTGTAAAAGCAAGCGATTGGCCAGCAAGGGAAGTCTGGGCGTGGCCAGCAAGAGCTTCTACTGTGAAGTTTGCGAGATCCATGTTAACTCTGAGACTCAACTCAGCCAGCACATGAACAGTCGAAGGCATAAGGATAGACTGGCTGGGAAACCTCCAAAACCCAAGTTCAACCCTCATGCCAAGAGTCAGCCTACCTCAACCGTGTCGCAGGGTGTCCGATGGAACGGTTATGCGGGCGGCGCAGTGTCTGCCATGAAGAAAGTTATCAGCCAATGCAATCTCTCCTCTCTGTCCTCACAGactaAACTTGTTCTACAGAAGCAATTGACAAAAAATTTGACCGCCAGCTTCCTGCCCACCCCCTTAACTCCACCCACCCTCTGCACCGTTGCGGCCAATCCTCTCGCACTGCGACACCCGCCGGGCACTACTTTCATTCAGACGCCCATCCTCGGCCCAGCCCTCTTTAGGCCAGCACCAGGACCTCTGAGAGCCACACACACTCCCATAATATTCTCCCCCTATTGA

Function

symbol description
znf385c Predicted to enable nucleic acid binding activity and zinc ion binding activity. Located in nucleus. Is expressed in Purkinje cell. Orthologous to human ZNF385C (zinc finger protein 385C).

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091112-1 Predicted to enable nucleic acid binding activity and zinc ion binding activity. Located in nucleus. Is expressed in Purkinje cell. Orthologous to human ZNF385C (zinc finger protein 385C).

Ensembl:

ensembl_id ENSDARG00000058154

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049782 False 1611 mRNA 0.53 9 17744339 17860047
TCONS_00049783 False 1527 mRNA 0.50 6 17806213 17856439
TCONS_00049784 True 1033 mRNA 0.52 5 17846890 17860047

Neighbor

gene id symbol gene type direction distance location
XLOC_025208 dhx58 coding upstream 34118 17689419 ~ 17710221 (+)
XLOC_025207 kat2a coding upstream 64225 17653784 ~ 17680114 (+)
XLOC_025206 rab5c coding upstream 92440 17615599 ~ 17651899 (+)
XLOC_025205 kcnh4a coding upstream 140230 17547532 ~ 17604109 (+)
XLOC_025204 hcrt coding upstream 202891 17537352 ~ 17541448 (+)
XLOC_025211 dnajc7 coding downstream 18077 17878124 ~ 17910375 (+)
XLOC_025212 ttc25 coding downstream 50522 17910569 ~ 17928233 (+)
XLOC_025213 cnp coding downstream 73085 17933132 ~ 17946949 (+)
XLOC_025214 aclya coding downstream 91743 17951790 ~ 18009316 (+)
XLOC_025215 NA coding downstream 180566 18040613 ~ 18061783 (+)
XLOC_025429 BX649540.1 misc downstream 12388692 30248739 ~ 30249036 (+)
XLOC_025203 CU207238.1 non-coding upstream 282454 17395239 ~ 17461885 (+)
XLOC_025197 BX470185.1 non-coding upstream 861035 16874401 ~ 16883304 (+)
XLOC_025188 CR388224.1 non-coding upstream 1371212 16373012 ~ 16373127 (+)
XLOC_025185 NA non-coding upstream 1502999 16186593 ~ 16241340 (+)
XLOC_025184 NA non-coding upstream 1582880 16153224 ~ 16161459 (+)
XLOC_025218 NA non-coding downstream 329562 18189609 ~ 18197126 (+)
XLOC_025227 NA non-coding downstream 810777 18670824 ~ 18672291 (+)
XLOC_025229 AL772362.2 non-coding downstream 911481 18771528 ~ 18788485 (+)
XLOC_025233 AL772362.1 non-coding downstream 1007788 18867835 ~ 18867952 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000034_05302438_05326245 ZNF385C coding CI01000034 null 5302288 ~ 5326245 (-)