G580995 (msl3)


Basic Information

Item Value
gene id G580995
gene name msl3
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 18400131 ~ 18401778 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU662966
AGCCAGTTTACGTTGTAATTTGCGATTTTCGTCAGTTTCCCTGAGCACATGGTCCTCTGCTGCCAATCGATCCCAACTTCTGTTCCAACCATTGAAGTGAATCAGGTATTCTGGGACTCGCTTTCCACGTTCATCTTTGCCAATTACAACATCGACGACCTTTGCATCATAGAGTACTTTAGCCTTCGTAGGGTCAGGTTCGAAACATAGGACTTTTTCTCCTTTGTGGAATTTAAATTTCATTCCCCGGGAGTTCATTTGTTCGTCATAGCGAGCAGGAGAGGAGGCATCTGGACCCCCCGCTCCTTAACCCTTTCCCCGCCGGGCTGTATCCAAAGGGGTCTTTGAAAAAAATATGGAGATGGCGCTAGGACACAACTCA
>TU662965
CCACCCCAGACTGTGTCTTGTGTGTGAGTTTACCTTCTGTTCCAACCATTGAAGTGAATCAGGTATTCTGGGACTCGCTTTCCACGTTCATCTTTGCCAATTACAACATCGACGACCTTTGCATCATAGAGTACTTTAGCCTTCGTAGGGTCAGGTTCGAAACATAGGACTTTTTCTCCTTTGTGGAATTTAAATTTCATTCCCCGGGAGTTCATTTGTTCGTCATAGCGAGCAGGAGAGGAGGCATCTGGACCCCCCGCTCCTTAACCCTTTCCCCGCCGGGCTGTATCCAAAGGGGTCTTTGAAAAAAATATGGAGATGGCGCTAGGACACAACTCA

Function

symbol description
msl3 Enables DNA binding activity; histone acetyltransferase activity (H4-K16 specific); and methylated histone binding activity. Involved in histone H4-K16 acetylation and regulation of transcription, DNA-templated. Located in nucleus. Part of MSL complex. Implicated in Basilicata-Akhtar syndrome.

NR:

description
PREDICTED: male-specific lethal 3 homolog isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU662966 False 382 lncRNA 0.47 3 18400131 18401778
TU662965 True 339 lncRNA 0.47 2 18400705 18401778

Neighbor

gene id symbol gene type direction distance location
LOC110527431 LOC106575289 coding upstream 157968 18205301 ~ 18242163 (+)
LOC110527430 gemin8 coding upstream 195298 18202651 ~ 18204833 (+)
LOC110528803 adcy10 coding upstream 275816 18111715 ~ 18127563 (+)
gcg2 gcg2 coding upstream 288480 18108790 ~ 18111651 (+)
LOC110527424 LOC106575296 coding upstream 292895 18096457 ~ 18107236 (+)
LOC110527437 LOC106575282 coding downstream 2976 18404754 ~ 18495689 (+)
LOC110527438 LOC106575281 coding downstream 121825 18523603 ~ 18581511 (+)
LOC110527442 LOC106575278 coding downstream 781605 19183383 ~ 19192955 (+)
LOC110527443 LOC106575277 coding downstream 1023587 19425365 ~ 19430875 (+)
LOC110527444 LOC106575275 coding downstream 1381067 19782845 ~ 19788004 (+)
G580994 LOC106574410 non-coding upstream 136 18398972 ~ 18399995 (+)
G580988 NA non-coding upstream 13766 18384709 ~ 18386365 (+)
G580784 NA non-coding upstream 101072 18296659 ~ 18299059 (+)
G580918 NA non-coding upstream 138677 18260684 ~ 18261454 (+)
G580899 NA non-coding upstream 198509 18201110 ~ 18201622 (+)
G581018 NA non-coding downstream 26478 18428256 ~ 18428581 (+)
G581031 NA non-coding downstream 56858 18458636 ~ 18458870 (+)
G581037 NA non-coding downstream 78505 18480283 ~ 18480548 (+)
G581319 NA non-coding downstream 108140 18509918 ~ 18510234 (+)
G580365 NA other upstream 583283 17813342 ~ 17816848 (+)
G580315 LOC106575303 other upstream 719463 17670275 ~ 17680668 (+)
G580179 NA other upstream 999598 17398793 ~ 17400533 (+)
si:ch211-181l5.2 cl10a other upstream 1066002 17333699 ~ 17336419 (+)
LOC110527403 LOC106574539 other upstream 1302207 17042409 ~ 17097924 (+)
G580997 NA other downstream 90449 18492227 ~ 18492909 (+)
G581976 LOC106581475 other downstream 574900 18976678 ~ 18976999 (+)
LOC110528807 LOC106574429 other downstream 1616077 20017855 ~ 20028775 (+)
G583605 NA other downstream 1837133 20238911 ~ 20239797 (+)
G584643 NA other downstream 2679050 21080828 ~ 21082615 (+)

Expression


Co-expression Network