G581309


Basic Information

Item Value
gene id G581309
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 18494981 ~ 18495687 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU663323
ggggggtaaaatcaGTTATTTCCACATATTACAATACTGAACGGACATAATAGTTGTAATCCTTTTCAAAGAGCATGGATCCATGGCATACTTGACTCCAAACACACAGGCATTGAGAATAGTGCATAGCAACACAAGCTGTTGAAAGCGTTTTTTATAGAAGTGAAGATGGGACGCGTATTCGACATGTCATTTTAGGGACACTGTGAAGATATGTAGAAATGTGAAAATCCTTGTAAATAATTCAAATGTCTCTCACACTTCAAATTCCTCTCGACATGCAGACGGATTGAAATGAACCAACAAACAAACTACCATTTAGAAAGTGTGCAGTATTTGCCAGCAAATATCCACAAAACTAGGAAATGATTGTAGACTACTGGTGTATTTGGGCGCAAAAAGCATCAGGTAAATTATAGAGTATCAAGAGCTGTAtcacatagggcggcgcacaattggcccagcattgtctgggttcggccggggtaggccgtcattgtaaataacacttcgttcttatctgacttgcctagttgaataaggGCTCAAacattttctttaaccatttttacatttacaaaaaaaatagagGCAGACAGTGCATGTAATGACAAAAGCAAGAGACGTGTTTGTTTTGTTGCTGAAAAGGAGGAATCAAAAAAGCTTTGGCAATTCCCAGAGTCCAGTAGAGTACTGTAAGTGCAAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU663323 True 707 lncRNA 0.39 1 18494981 18495687

Neighbor

gene id symbol gene type direction distance location
LOC110527435 LOC106574410 coding downstream 93185 18384671 ~ 18401796 (-)
LOC110528806 frmpd4 coding downstream 111658 18315416 ~ 18383323 (-)
LOC110527434 prps2 coding downstream 182987 18300391 ~ 18311994 (-)
LOC100170202 NA coding downstream 196917 18244368 ~ 18299083 (-)
LOC110527432 tceanc coding downstream 240971 18252237 ~ 18254010 (-)
LOC110527440 LOC106575280 coding upstream 567142 19062829 ~ 19068838 (-)
LOC118965376 NA coding upstream 646459 19142146 ~ 19145574 (-)
LOC110527100 NA coding upstream 650070 19145757 ~ 19154599 (-)
LOC110527441 NA coding upstream 680348 19176035 ~ 19181090 (-)
LOC110527445 nfip2 coding upstream 1327944 19823631 ~ 19832571 (-)
G581308 NA non-coding downstream 4513 18489816 ~ 18490468 (-)
G581306 NA non-coding downstream 6073 18488286 ~ 18488908 (-)
G581295 NA non-coding downstream 38213 18456470 ~ 18456768 (-)
G581293 NA non-coding downstream 39648 18455041 ~ 18455333 (-)
G581291 NA non-coding downstream 41299 18453388 ~ 18453682 (-)
G581314 NA non-coding upstream 7295 18502982 ~ 18503188 (-)
G581394 NA non-coding upstream 21129 18516816 ~ 18517037 (-)
G581415 NA non-coding upstream 50739 18546426 ~ 18549059 (-)
G581431 LOC106574413 non-coding upstream 80144 18575831 ~ 18579354 (-)
G581497 NA non-coding upstream 149712 18645399 ~ 18645613 (-)
G581174 LOC101077481 other downstream 259943 18217158 ~ 18235038 (-)
G581089 LOC106575297 other downstream 451601 18042927 ~ 18043380 (-)
G580487 NA other downstream 1094445 17397857 ~ 17400536 (-)
LOC110527396 LOC106574529 other downstream 1694295 16797680 ~ 16800686 (-)
LOC110528867 LOC106575374 other downstream 1933836 16559930 ~ 16635251 (-)
G583661 NA other upstream 1719962 20215649 ~ 20249985 (-)
otos2 LOC106575250 other upstream 2277180 20772867 ~ 20778065 (-)
LOC110527470 LOC103366558 other upstream 2342801 20838415 ~ 20839399 (-)
G585240 LOC106575179 other upstream 2925767 21421454 ~ 21424585 (-)
LOC110527499 LOC106575189 other upstream 3021708 21513832 ~ 21583054 (-)

Expression


Co-expression Network