XLOC_025214 (aclya)


Basic Information

Item Value
gene id XLOC_025214
gene name aclya
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 17951790 ~ 18009316 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049801
GAAGCCACGCTGTCTGGAGGAGGAAAAAGTGTCTCCTGCAACCCTATCTCGACTgtcaacacactcacacacaacactCCGTACTGCGGGAACACCCTACAAGAAGAAAACCTGCTCTCTTAAATCGCACACACGCCGTGCTTTAGTCCTCCAGCTCCATCATGTCAGCCAAAGCCATCTCCGAGCAAACGGGGAAGGAGTTCCTATACAAACACATCTGCACTTCAGCCAGTGTTCAGAACCGATTTCGCTATGCTAACGTAACTGCAGAAACCGACTGGGAGAGACTGGTCCAGGATCATCCCTGGCTCTTGACGGAGCGGTTGGTGGTTAAACCAGATCAGCTGATCAAGCGCAGAGGAAAGCTGGGATTGGTGGGCGTGAACCTGGATCTGAACGGCGTAAAGGAATGGCTCAAATCCCGCCTTATGCAGGAGACCATGGTGGGGAAGGCGAAAGGCATTCTCAAAAACTTCCTGATCGAGCCCTTTGTAGCGCACAAACAGGAGGAGGAGTTTTACGTCTGCATCTACGCCACTCGTGAAGGCGACTACATGCTCTTCCATCATGAGGGTGGCGTGGACGTGGGGGACGTGGACTCTAAAGCCCTCAAACTGCTGGTGGGAGTGGATGAGAAGATCAGCGCCGACACCGTCAAGAGTCAGCTGCTCACACACGCACCTGCTGATAAGAAAGAGATCTTGTCTAGTTTTCTGGTAGGCCTGTTCAACCTGTATGAAGATTTGTACTTCACATACTTGGAGATCAACCCTCTGGTGGTCACGAAGGATGGTGTGTATGTTCTGGACATGGCTGCTAAAATCGATGCCACAGCAGATTATTTGTGCAAAGCTAAGTGGGGTGATGTGGAGTTTCCCCCTCCCTTCGGCAGAGAAGCCTATCCCGAGGAGGCATACATAGCAGATCTGGATGCTAAGAGTGGCGCCAGTCTCAAGCTAACACTCCTGAACCCTCGCGGACGCATCTGGACTATGGTGGCAGGTGGCGGAGCTTCTGTTGTCTACAGTGACACAATCTGTGATCTGGGTGGAGTTAATGAACTGGCCAATTATGGCGAGTATTCAGGAGCTCCGAGTGAGCAACAAACATATGATTACGCCAAGACCATCCTCTCCCTGATGACCCGTGAGAAACACCCTGATGGTAAAGTCCTGATCATTGGAGGCAGCATCGCCAACTTCACTAACGTTGCAGCAACGTTCAAGGGTATCGTCAGGGCTTTCAAAGATTATCAGGACCCTCTGAAAGAGCACGAGGTCACTATATTTGTTCGCCGTGGTGGACCAAACTACCAGGAAGGTTTACGAGTGATGGGGGAAGTTGGAAAGACCACTGGTATCCCCATTCATGTTTTTGGCACTGAGACCCACATGACTGCTATTGTCGGGATGGCATTGGGTCATCGGCCAATCGCCACACAGCCTCGTGGTGCTGCCCACACCGCTAACTTCCTTCTCAATGCTAGTGGTGGGACCACGACTCCTGCCTCCTCCAGATCAGCCTCTTTCTCTGAGGTCCGAACTGGAGCAGAGTCTTCATCAGGTCTTAAGAGTCGTGCAGGACTTCCTCCAGCCAAAAGCACCACTTTGTTCAGTAACCACACCAAGTCTATAGTGTGGGGAATGCAGACGCGTGCAGTGCAGGGCATGCTGGACTTCGATTATGTTTGCTCACGCCAGGAGCCATCCGTAGCGGCCATGGTTTACCCCTTTACTGGAGACCACAAGCAGAAGTTTTACTGGGGTCATAAGGAGATTCTGCTGCCGGTCTATAAGAACATGGCTGATGCAATGAAGAAGCATCCAGAAGTGGATGTGCTCATCAGTTTCGCCTCTCTCCGCTCTGCCTACGACAGCACCATTGAGACCATGCAGTTCCCGCAGATCCACACCATAGCCATCATAGCTGAGGGAATCCCGGAGGCTCTGACCCGCAAGATCATCAAAATGGCAGATGAGAAGGGAATCACTATCATCGGTCCTGCAACGGTTGGCGGCATCAAGCCTGGCTGCTTTAAGATCGGTAATACAGGTGGGATGCTGGACAACATCCTGGCGTCAAAGCTGTACAGGCCGGGCAGTGTGGCCTACGTGTCCCGCTCTGGAGGAATGTCCAATGAGCTTAACAACATCATCTCTCGCACCACTGATGGAGTTTATGAAGGAGTGGCCATTGGAGGAGACCGATATCCAGGCTCTGTGTTCATTGATCACGTGTTGAGATATCAGGATACACCAGGAGTCAAGATGATCGTTGTGCTTGGAGAGATTGGTGGAAATGAAGAGTACAAGATTTGCAACGCCATTAAAGAAGGCAGGATCACCAAACCTGTGGTGTGCTGGTGCATCGGGACCTGTGCCACTCTCTTCTCCTCTGAGgtccAGTTTGGTCACGCTGGAGCTTGTGCTAACCAGGCGTCTGAGACAGCGGTGGCCAAGAATAAAGCTCTGGAAGAGGCAGGAGCCTTCGTTCCCAAGAGCTTCGATGAGCTGGGAGACGTCATCAAATCAGTGTATGATAATCTGGTAGCCAAGGGTGTGATTGTGCCTGCCAAAGAGCTTCCTCCACCAACAGTGCCGATGGATTATTCCTGGGCACGTgAGCTGGGTCTTATCCGTAAGCCGGCTTCCTTCATGACCAGCATCTGTGACGAGAGAGGACAGGAGCTCATCTACGCTGGCATGCCCATCACAGAGGTCTTCAAGTCTGAGATAGGGCTTGGCGGGACCCTCGGCCTGCTCTGGTTCCAGAGGAGGCTGCCCCGCTACGCTTGTCAGTTCATTGAGATGTGTCTGATGGTGACGGCGGATCACGGCCCTGCGGTGTCTGGAGCTCATAACACCATAGTGTGTGCTCGTGCTGGCAAAGACCTGATCTCCAGCCTCACATCCGGACTGCTGACCATTGGGGATCGCTTTGGAGGAGCTCTGGATGCCGCTGCTAAGCAGTTCAGTAAGGCATTCGACAGTGGCATGCTTCCTATGGAGTTTGTCAACAAAATGAAGAAAGATGGCAAACTCATTATGGGCATCGGGCACAGGGTGAAATCGATTAATAATCCTGATATGCGAGTGCAGATCCTCAAAGACTTTGTGAAGCAGCATTTCCCTGCCACCCAGCTGCTGGATTACGCTCTGGAAGTGGAGAAGATCACCACCTCAAAGAAACCAAACCTGATTCTGAATGTTGATGGTTTCATTGGAGTATCGTTTGTGGATCTGCTGAGGACCTGCGGTGGCTTCACTCGtGACGAAGCGGATGAGTTTGTGGAGATCGGAGCACTGAATGGCATCTTCGTGTTGGGACGCAGTATGGGATTCATAGGTCATTATCTGGACCAGAAGCGGCTGAAGCAGGGTTTGTACCGCCATCCTTGGGATGACATTTCCTACGTGCTTCCCGAACACATGACCATGTAACGACAGAATCCAGATCTCACTGAACCCATGAAGTCGAAACACTTTTTctctgttatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtaaatgtGGATCTGCACTTCTCCggatgtgagtgtgtttgtgtgtgtcctttttggtttatttttttctctgttcTGAATGTTTGTGTTCTTGTGTAAAACAAACCTGAGTTACTGTCCCAATATAAACTGTAAATGTAACCTGACTGCCTGATCTTGATTGTGTTgcaatggcattttaaaactgtGAAATCATCCTAACACATTCCAAATCTCCGTAGTACACATCATCTCGTATATATCTCTGCAAAATGTACATCTGCTTATGTCGGTGTGCCTACAAAAGGGAAATTATATTAGAAACCAAATCGCCTGGTTGCTGGAATATTCCCagtgttgtattattattattattattattattaatgctttgTTTAAAACAGCCGTGTCTGCAAActaaacttttgaaaatcacctAAAGAGTAACTTCAGTTTTCCCATAGctatgtttgtaatttttatttgacTGTTATTTTGAGTAATATTGTCTATTCTAATTAACACAGTGCAATATTTTAGTGCACTAGCGAGCAATagcttcatgtgtgtgtgtttgtaaggcTTAAAAATGCCAGATCACCTAATTTGCAGGGGGAGGGGAAAGAATGTtgctatttttaataactaatatatatatatatacacacacacacaaatgaaaccAGTATTTTGGCCATTGATGTTGTTTGTAAATGTGCAGCGTTTCCATAAATTCACAATGTTTACGGTCCATCTGCCAGTGCAGTTGTATGAAGATggcatttaaagttaaagttcatCACCAAATTGAATATAAAAGCGGGCTCATTAGCTATGTATTTTTTCTTTgtagtaatattaaataaagctatgAATTGTATCACTCCTAACATTGGTGAGCATGACTCGGTGTTTTAATTCGAAATGCCCACTAGATGGCAGTGTGCAAAATGCCTTGTAGAAGCACTACCGTTCATTAGGTTGGTGCTGGTGCCGAGCTAGTGTTCCTCCCaggcatgcactaaattccaggggtttcattaccacgacgtaaaatgggcgtggctcggtcggtgtttgggaaacgcccccttaaaaaaaaaaaacaatactgagaggtcaccgatcatgcgcagtacaggttcttttttagcgcggtcatttcaaacaggatgattatggataaagaacctaccgcggtggataacgaaggaaaaaacaatcatacaggttatttttttgttgttataatgttatattttaaagatttcattaacAAAAACAGCTGACCTCGTTTTAATCCGTATTactccgttttactgtctctgggcttttgtacttccattttaaaccaaataataatggttgtggtaagattaaccgtgtttttgtagtttaaaatatggtattcagtcatgtttaaacaaataaataccacattttttgtaataaa
>TCONS_00049802
tttatacATAGCTTTCAAAAGGCCTTCGGGATAAAGTAGTAGAAAGGCACAAGTCGGAAGGCTGCAAAAACATCAAAAGCTGGAAAAGTTATGTGGAgtgtgatttgatttcaggctgtATGACAATGAAGTCATTATTTCAAAGGGGTGTGATGATTCTCTATAGGTTTTCTATAATGTTCTATTCTGTATATgcggtttataatgtaatgaattgacataaaaaaatctttatttttaatgtgttagtGACGAAGCGGATGAGTTTGTGGAGATCGGAGCACTGAATGGCATCTTCGTGTTGGGACGCAGTATGGGATTCATAGGTCATTATCTGGACCAGAAGCGGCTGAAGCAGGGTTTGTACCGCCATCCTTGGGATGACATTTCCTACGTGCTTCCCGAACACATGACCATGTAACGACAGAATCCAGATCTCACTGAACCCATGAAGTCGAAACACTTTTTctctgttatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtaaatgtGGATCTGCACTTCTCCggatgtgagtgtgtttgtgtgtgtcctttttggtttatttttttctctgttcTGAATGTTTGTGTTCTTGTGTAAAACAAACCTGAGTTACTGTCCCAATATAAACTGTAAATGTAACCTGACTGCCTGATCTTGATTGTGTTgcaatggcattttaaaactgtGAAATCATCCTAACACATTCCAAATCTCCGTAGTACACATCATCTCGTATATATCTCTGCAAAATGTACATCTGCTTATGTCGGTGTGCCTACAAAAGGGAAATTATATTAGAAACCAAATCGCCTGGTTGCTGGAATATTCCCagtgttgtattattattattattattattattaatgctttgTTTAAAACAGCCGTGTCTGCAAActaaacttttgaaaatcacctAAAGAGTAACTTCAGTTTTCCCATAGctatgtttgtaatttttatttgacTGTTATTTTGAGTAATATTGTCTATTCTAATTAACAC

Function

symbol description
aclya Predicted to enable ATP citrate synthase activity. Predicted to be involved in acetyl-CoA biosynthetic process and fatty acid biosynthetic process. Predicted to act upstream of or within citrate metabolic process and lipid metabolic process. Predicted to be located in mitochondrion. Predicted to be active in cytosol. Is expressed in several structures, including axis; digestive system; nervous system; optic vesicle; and periderm. Orthologous to human ACLY (ATP citrate lyase).

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0006633 fatty acid biosynthetic process biological_process
GO:0006085 acetyl-CoA biosynthetic process biological_process
GO:0006101 citrate metabolic process biological_process
GO:0005829 cytosol cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003878 ATP citrate synthase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer molecular_function
GO:0016829 lyase activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-031113-1 Predicted to enable ATP citrate synthase activity. Predicted to be involved in acetyl-CoA biosynthetic process and fatty acid biosynthetic process. Predicted to act upstream of or within citrate metabolic process and lipid metabolic process. Predicted to be located in mitochondrion. Predicted to be active in cytosol. Is expressed in several structures, including axis; digestive system; nervous system; optic vesicle; and periderm. Orthologous to human ACLY (ATP citrate lyase).

Ensembl:

ensembl_id ENSDARG00000099079

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049801 False 4970 mRNA 0.47 28 17951790 18009316
TCONS_00049802 True 1023 lncRNA 0.37 2 18006111 18008388

Neighbor

gene id symbol gene type direction distance location
XLOC_025213 cnp coding upstream 4841 17933132 ~ 17946949 (+)
XLOC_025212 ttc25 coding upstream 23557 17910569 ~ 17928233 (+)
XLOC_025211 dnajc7 coding upstream 41415 17878124 ~ 17910375 (+)
XLOC_025210 BX901973.1 coding upstream 72436 17855981 ~ 17879354 (+)
XLOC_025209 znf385c coding upstream 91743 17744339 ~ 17860047 (+)
XLOC_025215 NA coding downstream 31297 18040613 ~ 18061783 (+)
XLOC_025216 ankrd40 coding downstream 53555 18062871 ~ 18080924 (+)
XLOC_025217 wfikkn2a coding downstream 88384 18097700 ~ 18104658 (+)
XLOC_025218 NA coding downstream 180293 18189609 ~ 18197126 (+)
XLOC_025219 si:ch211-139g16.8 coding downstream 380047 18389363 ~ 18396564 (+)
XLOC_025429 BX649540.1 misc downstream 12239423 30248739 ~ 30249036 (+)
XLOC_025203 CU207238.1 non-coding upstream 489905 17395239 ~ 17461885 (+)
XLOC_025197 BX470185.1 non-coding upstream 1068486 16874401 ~ 16883304 (+)
XLOC_025188 CR388224.1 non-coding upstream 1578663 16373012 ~ 16373127 (+)
XLOC_025185 NA non-coding upstream 1710450 16186593 ~ 16241340 (+)
XLOC_025184 NA non-coding upstream 1790331 16153224 ~ 16161459 (+)
XLOC_025227 NA non-coding downstream 661508 18670824 ~ 18672291 (+)
XLOC_025229 AL772362.2 non-coding downstream 762212 18771528 ~ 18788485 (+)
XLOC_025233 AL772362.1 non-coding downstream 858519 18867835 ~ 18867952 (+)

Expression


Co-expression Network