XLOC_025215


Basic Information

Item Value
gene id XLOC_025215
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 18040613 ~ 18061783 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052634
GAAGAGAAGATGAGTTTGCTCATTGCTCTGATGTACTGAGAGCCGTCCATGGAGTGGCACCTGAATGATGTCTTCAGTGTCCTGCGCAGCGTTCTGGAACACAGACTGGCAGTGCTGCAGGAAGGTCTGTATGGTGCGGATGGTGCCCAGCAGATTGACGTCCAGGATGGCTCTTATAGTGTCCAGCGAGTGGGTTTCCAGAGGACCCATAAGACCCACACCGGCATTACACACTAACACAAAAATATCAGGAGGAAATACATGAGAATGGCTGTGCATGCTTTTGCTGGATTTGATGCGAGATGCACAGCAAGGCTGAGTCCAATCCCTGAAGAGCATCCAGTGATGAGAACAACCTTCTGCTCCATTTTTACAAGAAAACTCAGATGAGACGAGCGCTGCAATGATTCTCCGAGGTGCCACatcacatatacagtatatacacatcaGC
>TCONS_00049803
aAGCTATACAAATGTTAACTTCATATTTTTGATTAaggtaagttgagatgactaaaaaGTAACTGATTCAATTTAATGTAagaattgttttacagtgtactatcgctttttacagtgcagtatattaataaaataataacgttTTGGTTAACCGTAAAGATCAGACATGCACAAACACTCAATTTAACAGAACCCACTGAAATGTGTTGTTCTAATACCTTTGTAGGCTTTTGCTGGATTTGATGCGAGATGCACAGCAAGGCTGAGTCCAATCCCTGAAGAGCATCCAGTGATGAGAACAACCTTCTGCTCCATTTTTACAAGAAAACTCAGATGAGACGAGCGCTGCAATGATTCTCCGAGGTGCCACatcacatatacagtatatacacatcaGCAGCTGTGCAGGCTACATGACTGCATGAATCTCTCTGGACGTTTTCACTGTCCTGGAACTGCTTTACACCGCCGAACTTCTTTTAAAGGAACTT
>TCONS_00049804
TGCATTGTGGGATGTGGAGCTCTATACATTATTGCCGTTCTTATAAACAGAATTTACACGACTAAACGGACCGAATGAAGAACAATTATACAATTACatgtatttaaattgtgtttCTGCAGCATTTGTCGCTTTCATCCATTTTGAATTCAATAAGCATCATCTTCTCATGTGACCTGATGTGAGCTGCCATCATTTTTTACACCTACAGCAGGCTACATGACTGCATGAATCTCTCTGGACGTTTTCACTGTCCTGGAACTGCTTTACACCGCCGAACTTCTTTTAAAGGAACTTGTCGTTGGATGTGCAAAATGCTGAACGCTGCAGCAGCCGACAGGAACAAGGACCCGATCCTTTCTGTGCTGAAAAGCAGGGTGGCATCCAACAGACGTCTGTTCGCTTTGGAAATATCCTCTGGCACAGGACAACATGTCGTTCACTTCGCCAAAGCATTCCCGAACATTACATGGCAACCGTCTGAAGTTGAGACTCAGTCGTTATCGAGTATTGAGGCATATAGACAGTATCACCGGCTGCAGAATGTACAGCCACCCATATATCTTGATGTGTCTCAGAGCTGGCAGACCTGGGGAGGATTTCCAGCAGAGTCATGTGACCTGATCATAAACATCAACATGATGCACATCTCTCCTCTGGCCTGCACAACGggttTGTTTCATGGTGTTGGACAGATACTGAAACCACAAGGATTACTTCTGACTTATGggCCTTATGCCTTCAATGGATCGATCGTTCCTCAGAGCAATTTTGACTTTGACCAAAGTTTGAGATACAGaaatcCAGAGTGGGGTCTAAGAGATGCATCATTTCTGACAACGTTAGGACAAGAAAATGGACTGCGATTGGAGGAAATTGTTGATATGCCCGCCAACAACAAGTGCTTACTCTTTCGCAAGGACAGTGTGGTTTGATATCATATTAATCTGTACAGTAACGCACAATATTTACATTTGCGTGGACTCCTGCCAGTGTTTTAACGGTTTAAAGGCAACAATACAGAGGCTTTGCTGAAGTTGGTAAGATGTGTTCTTGCATTAATGTggcttaaaaaatgtttacagcataGGAAAGTAATATTTTAGACGTTTAAAGGGATGTGCACTTTTGTGAAATTAATGACAACACACTTTATATTAAAATTACTACTTTGATTGCAGGGAAAGTAAACTTAAAGTGCCTGTAGTTAATCTGAGGATATAATGTTGATGAAGCTGGACTTTGATTCTAATAATTGTTCATTTCTTAGTACATCCCATTGGTGTattgttttataatgttatttactCCTATAGTTTTAAATCTTAAATACAAGGTTTCTGCTAAACATGGCTTTTAACATGGCCTAACATCTTAGCATAGCATTACCATCCTTAACCTGTTGTTGACCAAACACCAATTTTCGTAACCAAGTGAAttatgtgtgattgtgtgttttgATAAATTTAAATAAGATATAAACTTAAAgacttttgttgcttgttcaaactacttattttaaatgagttgaaacTCAATTGTTAAGTTTTTTagacttaattgtttcatgttcattccacttaaatttgtaaagattatgaagttaacctaattgtttcgTATTGGGGCAACATGGAGttgtgtggaacctagcatttcttacagtgtaaactgaaatatatatgtatatttaatgcATTACAATCTTTGGATTTAAAGTGAATTCTACAGatgataaaacaaatacaattatgttcacaaatcaatcattttaaattGCAAAATAACCATTTTTTCATAGCTATGGTTTACTAGTTACTTTACTTGTTTTACTTTATTGGGGGCACACACTAATAATGAATTCCCACAACTTAATAgattgttctctaattttgatgcAATAAATCATTGCCAACTTGAACTaattaattctttttctttttaaattaaatcataaaaaaggaatTGTATATTGCAACAAGGGCATTTTGTAATTTTGCAGTGTGCATAGTTAAAAAGAGGGAACAAATTACTAAAACATGCTGGCTTACCAGGAAGTGACTGTTTAATTTGTGGTTacaaatgtatgtgtttttaaggggtagttcacccaaaactaaaaatgtactcactttTTACTCACAATAAAGCCTTGCTCActctg

Function

GO:

id name namespace
GO:0005794 Golgi apparatus cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-031118-200 Orthologous to human METTL26 (methyltransferase like 26).

Ensembl:

ensembl_id ENSDARG00000027461

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052634 False 451 lncRNA 0.49 5 18040613 18047299
TCONS_00049803 False 491 mRNA 0.38 4 18046776 18051045
TCONS_00049804 True 2164 mRNA 0.36 7 18050667 18061783

Neighbor

gene id symbol gene type direction distance location
XLOC_025214 aclya coding upstream 31297 17951790 ~ 18009316 (+)
XLOC_025213 cnp coding upstream 93664 17933132 ~ 17946949 (+)
XLOC_025212 ttc25 coding upstream 112380 17910569 ~ 17928233 (+)
XLOC_025211 dnajc7 coding upstream 130238 17878124 ~ 17910375 (+)
XLOC_025210 BX901973.1 coding upstream 161259 17855981 ~ 17879354 (+)
XLOC_025216 ankrd40 coding downstream 1088 18062871 ~ 18080924 (+)
XLOC_025217 wfikkn2a coding downstream 35917 18097700 ~ 18104658 (+)
XLOC_025218 NA coding downstream 127826 18189609 ~ 18197126 (+)
XLOC_025219 si:ch211-139g16.8 coding downstream 327580 18389363 ~ 18396564 (+)
XLOC_025220 rps2 coding downstream 337093 18398876 ~ 18403179 (+)
XLOC_025429 BX649540.1 misc downstream 12186956 30248739 ~ 30249036 (+)
XLOC_025203 CU207238.1 non-coding upstream 578728 17395239 ~ 17461885 (+)
XLOC_025197 BX470185.1 non-coding upstream 1157309 16874401 ~ 16883304 (+)
XLOC_025188 CR388224.1 non-coding upstream 1667486 16373012 ~ 16373127 (+)
XLOC_025185 NA non-coding upstream 1799273 16186593 ~ 16241340 (+)
XLOC_025184 NA non-coding upstream 1879154 16153224 ~ 16161459 (+)
XLOC_025227 NA non-coding downstream 609041 18670824 ~ 18672291 (+)
XLOC_025229 AL772362.2 non-coding downstream 709745 18771528 ~ 18788485 (+)
XLOC_025233 AL772362.1 non-coding downstream 806052 18867835 ~ 18867952 (+)
XLOC_025234 CU151886.2 non-coding downstream 830867 18892650 ~ 18892766 (+)

Expression


Co-expression Network