XLOC_002522 (ube2l3a)


Basic Information

Item Value
gene id XLOC_002522
gene name ube2l3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 3133098 ~ 3138859 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004711
GTGTATTTCTAGTTGTCCATTCGGTCAGTTATTTGGTATTTTGTATATATAAGTTACTATTATAAGAcactatataatatattgtattgttGTACTGTTTTGCTAACTCGCCTAGGACGTACTTAGCATGTGCATGTCAGCCAAGACCCTATAACTTATAAAACGAAGTGTAACAGCTAAGGAAAAACAACAGATATcgctttttaaaaatcacaatattaaCGTTTAACCCATTTCAATTGAGCTTTTAAAGCATCTAAATATGAATATGTTAAAACTATGCACAACGCGGAATTTATTGAAATCACGTTTATATTATTTGGGTTGTTTTTGTAAAGGttataattgtttgttaattagtGGATTTATTTAGGAATTATTAACGACACAGTTTCTCATTTGATGGTCAAAAGATCATTTACTAGTTTGATTAGTTTATTTGAATGACTGAAGTGAATCGAGCGCGCTTTGCATTGTGGGTACAAAGCAGATCCAAGATGGCGGCGAGCAGGCGACTGCATAAGGAACTTGATGAGATCCGCAAGTCTGGAATGAAAAATTTCCGCAACATTCAGGTGGATGAGTCAAATATTCTGACCTGGCAAGGACTAATCGTCCCTGACAACCCACCATATGATAAAGGTGCATTCCGGATTGAGATCACATTCCCTGCTGAATACCCCTTTAAACCTCCCAAGATCACATTTAAAACCAAGATCTATCACCCGAACATTGATGAGAAGGGTCAGGTGTGCCTGCCGGTTATAAGTGCTGAGAACTGGAAACCAGCTACCAAAACTGACCAAGTTATCCAGTCTCTCATCGCCCTTGTCAACGACCCGCAACCAGAACACCCTCTGAGGGCCGACCTGGCGGAGGAATATTCAAAAGACCGTAAAAAGTTCTTTAAGAACGCAGAAGAGTTTACAAAGAAACATGGCGAGAAGCGGCCAGTGGACTGATATCGCATGGGCGTCTTTCCCTTGTTTTTCCTTTGCCCACTCCTCCAAAACAGCCCCTCCCTCCCCAGTCCAGAACCCCGCCAGCCTGCCCTCACTTAGCTGCATCCGACCTTCGGCAGAAAGACCTCTGTCTCTCAGCCTGTAGAGGTTGAAAGGGTGTTAAAATTGTGGTCAGCGAATCATGATAATGAGAactcgatgatgatgatgatagaaGTGGTGAGATCTGGGGGCGGGGAAGGACGGGGTTGTTCCTTTTAATTTGTTCTTAAATTGCACAGAGATATGTTCAGCTCATGTAATCTGCTGTGTGATAAACCTTGACTGTTTTCATGGGCAGAATACTGCGGTGAACCAGAGTATAATGTTAAGCCTTTCACATTTATGACATTAAAAGAAATCAAACCCAATAGTTCATTAATGGAAACACATAATACATCAAAGGTGTgtggcaaatgttttttttttattattatataaatatatatttctcttTCATCTctgcaattttttattatttttttgcttagatTGCACTGTTTTCTGTGGAAAAAGGTTTCATGTTCTTCATAATCAGTTTGTAACACGTTGAATCACAAACTAGTCACTGTCACCCATATAGTTTATGATGTCATAAAAAGGAAAGCAAATACCTTTC

Function

symbol description
ube2l3a Predicted to enable ubiquitin conjugating enzyme activity and ubiquitin protein ligase binding activity. Predicted to be involved in protein polyubiquitination and ubiquitin-dependent protein catabolic process. Predicted to be part of ubiquitin ligase complex. Predicted to be active in nucleus. Is expressed in blastomere; brain; paraxial mesoderm; and somite. Orthologous to human UBE2L3 (ubiquitin conjugating enzyme E2 L3).

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0000209 protein polyubiquitination biological_process
GO:0000151 ubiquitin ligase complex cellular_component
GO:0005634 nucleus cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0031625 ubiquitin protein ligase binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0061631 ubiquitin conjugating enzyme activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2977 Predicted to enable ubiquitin conjugating enzyme activity and ubiquitin protein ligase binding activity. Predicted to be involved in protein polyubiquitination and ubiquitin-dependent protein catabolic process. Predicted to be part of ubiquitin ligase complex. Predicted to be active in nucleus. Is expressed in blastomere; brain; paraxial mesoderm; and somite. Orthologous to human UBE2L3 (ubiquitin conjugating enzyme E2 L3).

Ensembl:

ensembl_id ENSDARG00000112087

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004711 True 1620 mRNA 0.39 4 3133098 3138859

Neighbor

gene id symbol gene type direction distance location
XLOC_002521 ankrd34ba coding downstream 99828 3031636 ~ 3033270 (-)
XLOC_002520 marveld2a coding downstream 161691 2943676 ~ 2971407 (-)
XLOC_002519 oclna coding downstream 189624 2924775 ~ 2943474 (-)
XLOC_002518 NA coding downstream 233794 2897979 ~ 2899304 (-)
XLOC_002517 ddx56 coding downstream 257363 2856377 ~ 2875735 (-)
XLOC_002523 pi4kaa coding upstream 48430 3187289 ~ 3258073 (-)
XLOC_002524 slc25a1b coding upstream 129722 3268581 ~ 3295197 (-)
XLOC_002525 NA coding upstream 183278 3322137 ~ 3332362 (-)
XLOC_002526 naa25 coding upstream 225791 3364650 ~ 3394290 (-)
XLOC_002527 ddx55 coding upstream 259012 3397871 ~ 3416258 (-)
XLOC_002510 NA non-coding downstream 1179639 1948097 ~ 1953459 (-)
XLOC_002506 NA non-coding downstream 1391923 1678283 ~ 1741175 (-)
XLOC_002505 NA non-coding downstream 1414461 1669144 ~ 1718637 (-)
XLOC_002504 NA non-coding downstream 1465468 1666342 ~ 1667630 (-)
XLOC_002529 CU571170.1 non-coding upstream 367681 3506540 ~ 3506654 (-)
XLOC_002530 FP236598.1 non-coding upstream 629792 3768651 ~ 3768766 (-)
XLOC_002531 NA non-coding upstream 815231 3954090 ~ 3956849 (-)
XLOC_002532 NA non-coding upstream 893619 4032478 ~ 4046317 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G374190 NA unknown CI01000178 null 992182 ~ 997189 (+)
mexican tetra (Astyanax mexicanus) G172168 ube2l3,ube2l3b,ube2l3a,ub2l3,LOC106562742,LOC105014760,LOC107599129 non-coding NC_035916.1 CM008319.1 342385 ~ 349221 (+)