G583188


Basic Information

Item Value
gene id G583188
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 19819710 ~ 19823496 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU665285
TCTGTCCTTGTTTCCTCAATTGCTCTCAAAGCGCATTGGAGGACAGGATACAAGGTCCCTCCCTCCAACCTCTTCCTCCAATGGTCTTTGAGAGGAATTGAGAAACGGCCCATGACTGATTctctctaaaccctcagaggttaTAGTTTGGTTGTTGGTTTCGTTAGATGGCATACATTTACCTCACTCTGGCATTTGTCCAACCAAAAATGTTTTATCAAAATGACAAAGTATAAACCTCTTCCTGAAAAGCTCATTGTTTGCCATACAGAGGCCTGCTTTTACTGAATGAATGTGGGTTTTATTTGTTCTTTCGGTGGCTGTCCCCAATCCAGCCTCTTTATAAACTGTTAATGAGTGACCCATTTACAGAACTCCCTTCCGGTTGGCAAATGTTCTCTATTATAAggcactttttttttctccctttttaTCAGGCTGGGATAGCTTAGGCCCTACTTCTCACAACCTCAATACTTAtccacctcttccctccctccctccctccatccaccctttAACTAGAGCGATTTGGAAGAGAGGCCAGGGCACAAAGTAAACTCTGTCACACGCACAAGCCCAGAGGGAACAGTGCTGACAATTGCTGTCGGCAGCATATCTGAGGTCTCGTTAGCCTATAGCTCCTTACGGCCAAACTAAGCATGCGCCTGCCCTGCTGCTACAGGTTCCCCGCTTCCCGGCCTGTTGTGGACGCTACCGGGGCTTTAAGTCAACACTCTCCTCACTCTCTGAAGGGTGATCAAGCTGAGCTCTTAGAATCAGTTGACTCAAAGATGACAACTCCCtccaggggacaggagagagcgaggggggaacTGAGTTGAAACTAAATAGGAGACAGTAATAGGGTTGCTGTGTGTGCTTCCTGATGGCTTTGGAAGTCGGTGTGTATAGGTGTAAATAATCGTGTCTGTGGTGTGGATGCATAATGTGTACAAGTGAGTTTCATACATTCTATGTTGCTGATTTCTATGTTTGTGCCTGCATACATgaggatttgtgtgtgtgcgtctgtgaatgtgtctctgtgatgtatTAGCACACTCGCAATAAGCATGTTGCCAAGAAACGGCGGGATATGTAATCTCAGCAGCACAAGGCTGCTACAGCTTTCAAGTGGGCACAAAACATTGTGGAGGGTGTGGAGGGAAGAGTGGCTTGGCCCACCTGTTGGTTTGGCAGATACACTCTTGTCTCTTTACATCAGAGTAAAGTAACCACAAATAGAGCCTTGGGCTCTCTGCTGTGTGTGGAGGGTTCTGGAAGGATTTCCTAAATGCCTGCCTGTCTTCAGTCAAAGCGGGCTATGGTTCTTTGTTATCGTCATACAGGCATGCTAGAATTCTCATGCATACTGACTACTTCAAATTGGGTTGTTGCATTTCACTGTGTACACATTTAGCTAATTAGTACAAGATCAGGAAATATTCCTTCTCACTGAATGAACTGACGTCAAGTGATGCTCATAAAGAATTGCACTTTTTGTGGCCGTTACCAAGCACATTTCCAACTGCAATGAAATCCAAAGGACTTACGTATTGTATGTCTGTGTGCGTTCGTGCGTATGCATAGCAATCCAGGCAGGTCTAAATCTACATAGGAACCCTTGGTCATTTCACACATCTGTGGGCTTTGGAAAACCCACCACAGCCTGACCCTATGGTCATCTCTATACCTAAAGAGGAATTCTACACCTGGCTGCAGAAACCAGTTCAAAGCCAGCCTTTCTGACACTGCATGCCAAACTATCAATACCCCTGAGGTGTCATGGTACAGTTTTAGGTGCAGGGATAGTCAGAACGGGCCTAAATATTCAACAACTTCTATTTGGATGAGAATAATTTCAGGGGACTGGAAGATGTAGGATGACGAGTTAAGGATAAGCACATTATGGCTGAGGTTCGTATAAGAGTTAGAGGGCTGATTTCAAAACGCAATTCCCATAACAGCTGATCCAGGGTTGTTTAAGTTGCTAACCTCATGTTTATGGGTTTCACTGAGATATTGGAGGGCTGATGCTAGACCAGTCGTTAATGGCAGATTATAACCATAACCAATATTAAGACCTCAGATCTCTTGTGGGAACTGGTGGTGTGGCATTGGAGCTGGCAGGGAGGCTCAGATCTGTTGTGGGGACTGGTGGTGTGGCATTGGAGCTGGCAGGGAGGCTCAGATCTGTTGTGGGGACTGGTGGTGTGGCATTGGAGCTGGCAGGGAGGCTCAGATCTGTTGTGGGGACTGGTGGTGTGGCATTGGAGCTGACAGGGAGGCTCAGATCTGTTGTGGGGACTGGTGGTGTGGCATTGGAGCTGGCAGGGAGGCTCAGATCTGTTGTGGGGACTGGTGGTGTGGCATTGGAGCTGGCAGGGAGGCTCAGATCTGTTGTGGGGACTGGTGGTGTGGCATTGGAGATGGCAGGGAGGCTCAGATCTGTTGTGGGGACTGGTGGTGTGGCATTGGAGCTGGCAGAGAGTTTCTTGCGCTCACTTCCCAAGCGCTCTCCACTTTGACAGGGTTAATCTGCTCTGACGATGAGCAGTTGTGCTCGGCTCCTCTtagattcctccctgattccttcCCATAGCAGTAACATGAACTCCTCCAGCGCGATAGGGAACCTGGAGAAGAAAGTAGAGGAGTGTGAGTGTTTCACGTTACTTCCTTGTGATGTGATCAAGGGATGCATCCTGTCAATTAATTttggtaaagtgtgtgtgtgtgtaggtttgcATCAAGGGAAAGGAATATGGAACAAATAAATACCTTCTATGTGAGAGTCGACATGGACTTAGATTTGTCTTgaaatgggatttttttttatctgcaTCAAATCATTTTTTCAAAATAATTGTCAATGGAGTCCAATCAATTTAAGAGGAACATAGCCTACAGTATAATCTGAACTAAAACATCTAATCATTAAAAATACAACAGGTTTCTTGCGTAGTAAAACGTACATTACATGttaaacagattttttttaaataaacagatATGTGTCACTTCTAGTCCCACATAAAAGTTGTTCTGGCAGAGCTCCATCAGGACAGGTTCTTCATGAAGTGAATCAAACCAGCTGTTGCTCAGCCGTCGCCGTGGCAACTGCCACACAATATTTGTATTAGGATGTGCGAGAGACATATGATACAGACAGTTCTGCTCGCGCCGGCCCTAGAGTACACAGCGTTATGCACAGCTGTTACGCACAAGAAAAACAGTGCCAGTTTTCTGCGCTGTCGATGACGAGCTTGTTTCAGTCTGTTGCATTGGGTCGTCTTGAGAATGGGTTCACGAAACAACCAAAGAGATGTTTCCAATTCCGGAACCCCAATATAACTGTTCCCTTTCTCTTGTTTGTGTTCCACAACATTTACCTCCTGTCTGTTGAGCCATCCATCCAGCAGCAGAGCGAGATATCAGCTCAACGTCTGCAAATATTGACATTCTTTGGAGGGTGCCACCTGGCCAACCTGTGGAGTAGTATTGCCCCActtccagaccagaccccttTTTAGCCACACCCCAAATGGCAAGGCTTCCTACTGTAGAGTTTGATGTATTGtaggcacagagagagaatatCATTCCTTTCAAACGCATTTATACAAACAGATGTTGACCTAACGTGCATTCAATACCTCATTAAAGAGTGCCTTGATTGGATAAGTAAACACCTATAAATTGTTCTATTTTAGATTACGGAACGGGGGCCACCATCATCCCCTTTGTTTTCTCCAAGTCCTGTAGACTACCCTTTCAAAAGAGC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU665285 True 3787 lncRNA 0.46 1 19819710 19823496

Neighbor

gene id symbol gene type direction distance location
LOC110527441 NA coding downstream 638620 19176035 ~ 19181090 (-)
LOC110527100 NA coding downstream 665111 19145757 ~ 19154599 (-)
LOC118965376 NA coding downstream 674136 19142146 ~ 19145574 (-)
LOC110527440 LOC106575280 coding downstream 750872 19062829 ~ 19068838 (-)
LOC110527435 LOC106574410 coding downstream 1417914 18384671 ~ 18401796 (-)
LOC110527445 nfip2 coding upstream 135 19823631 ~ 19832571 (-)
LOC110527446 LOC106574421 coding upstream 28308 19851804 ~ 19881758 (-)
cfap221 cfap221 coding upstream 173860 19997356 ~ 20017679 (-)
LOC110527451 LOC106575269 coding upstream 205138 20028634 ~ 20038269 (-)
LOC110528808 steap3 coding upstream 214984 20038480 ~ 20046983 (-)
G583190 NA non-coding downstream 5212 19812037 ~ 19814498 (-)
G583206 NA non-coding downstream 28893 19790579 ~ 19790817 (-)
G583199 NA non-coding downstream 45673 19773815 ~ 19774037 (-)
G583192 NA non-coding downstream 54384 19765109 ~ 19765326 (-)
G582872 NA non-coding downstream 189005 19630488 ~ 19630705 (-)
G583223 NA non-coding upstream 19938 19843434 ~ 19843829 (-)
G583186 NA non-coding upstream 24224 19847720 ~ 19851609 (-)
G583246 NA non-coding upstream 53684 19877180 ~ 19909687 (-)
G583255 LOC108249475 non-coding upstream 65893 19889389 ~ 19892589 (-)
G583260 NA non-coding upstream 70801 19894297 ~ 19894565 (-)
G581174 LOC101077481 other downstream 1584672 18217158 ~ 18235038 (-)
G581089 LOC106575297 other downstream 1776330 18042927 ~ 18043380 (-)
G580487 NA other downstream 2419174 17397857 ~ 17400536 (-)
LOC110527396 LOC106574529 other downstream 3019024 16797680 ~ 16800686 (-)
LOC110528867 LOC106575374 other downstream 3258565 16559930 ~ 16635251 (-)
G583661 NA other upstream 392153 20215649 ~ 20249985 (-)
otos2 LOC106575250 other upstream 949371 20772867 ~ 20778065 (-)
LOC110527470 LOC103366558 other upstream 1014992 20838415 ~ 20839399 (-)
G585240 LOC106575179 other upstream 1597958 21421454 ~ 21424585 (-)
LOC110527499 LOC106575189 other upstream 1693899 21513832 ~ 21583054 (-)

Expression


Co-expression Network