G583598 (LOC106575263)


Basic Information

Item Value
gene id G583598
gene name LOC106575263
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 20225712 ~ 20227864 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU665721
taatgtttactgttcatttttattgtttatttcacttttgtatattatctacctcacttgctttggcaatgttgacacatgtttcccatgccaataaagccccttgaattgaattgaattgagagagagagagagacagggagagagagagagacagagacagagagagacagagagagacagagacagagacagagacagagacagagacagaaatatacacagagagaaagattTAGTTACCAAAGTCTTCACTTGGAATAACCCTGACATCTGACTTAGAGATCTTTTTGATTTCCAAGGCAGCTCTCAGAGGCATGTTGTTGTCCAATATAAAGTAAGCTGTGAGGATAAAGTGTGAAAGTAACCATTGACACACTGTGTGTAAAGAGACACAAGGATAGCGATTATATGGGGTATTAAACTGTGATGGAAAAATCAATCAACATATTGTTTCACAAAGCACATTCATTTGAGTTGAACATTTTTCTAATACAGTTGGCTGACTTCACATAGGCCACTGCATCTAAACCACATGTCCTGTGATCCTTTGTTTTAGACTGTCACCAATCACATCATTTCAGTACAATTATGCCTCATATTCAGTATCATTGAAAAGCATCCAGGCATATAAAAGACAAATCAATACAATTTGCATTAAAAAACACTTCCCAGATGCTCATTTAAACCTTGGCAGAACATTTCATTTGGACAGCTGTTGAAAATGTATTTCACACGATGTGAAACACAGCCAACAATCTCGTGGCCAAATATGAAATAGGAACCATTAAAACAGACTGgaaatagtacagtacagtacagtacaggagatGAGAATTCATATCAATACTTAGCATTACTCACTGTTTACATCATTAAAACTCTGCAGCATCACAGATGGAGCACCGGGACctttacactgtagaataacatGCTGTTTGTTCGGGCTGATGTCTGCATCAAAGAACGCGCATGCTTCCTGGTTCATCTCACAGGTCAAACATCGTTGAGAGAACAGACCAATAGTAGACGCACTGTACACGTGTCTCTTTTGTGGGGAGTCTTGAGTACTGATAAAATATATGGTTTGCTCCCCCTCATCATAAGCTAatatcttggtcacctcccagttGCCTGACGTCAAGTGACGGACATCATTTTGATCACTTCTGAACGATTTGGTGAACATGGCAATATGATGGAAGTCTCCTTGTCCCCCCTGCTTCACCGGTATGGTCAGGAAAAACCTGCTCCTGT
>TU665723
taatgtttactgttcatttttattgtttatttcacttttgtatattatctacctcacttgctttggcaatgttgacacatgtttcccatgccaataaagccccttgaattgaattgaattgagagagagagagagacagggagagagagagagacagagacagagagagacagagagagacagagacagagacagagacagagacagagacagaaatatacacagagagaaagattTAGTTACCAAAGTCTTCACTTGGAATAACCCTGACATCTGACTTAGAGATCTTTTTGATTTCCAAGGCAGCTCTCAGAGGCATGTTGTTGTCCAATATAAAGTAAGCTGTGAGGATAAAGTGTGAAAGTAACCATTGACACACTGTGTGTAAAGAGACACAAGGATAGCGATTATATGGGGTATTAAACTGTGATGGAAAAATCAATCAACATATTGTTTCACAAAGCACATTCATTTGAGTTGAACATTTTTCTAATACAGTTGGCTGACTTCACATAGGCCACTGCATCTAAACCACATGTCCTGTGATCCTTTGTTTTAGACTGTCACCAATCACATCATTTCAGTACAATTATGCCTCATATTCAGTATCATTGAAAAGCATCCAGGCATATAAAAGACAAATCAATACAATTTGCATTAAAAAACACTTCCCAGATGCTCATTTAAACCTTGGCAGAACATTTCATTTGGACAGCTGTTGAAAATGTATTTCACACGATGTGAAACACAGCCAACAATCTCGTGGCCAAATATGAAATAGGAACCATTAAAACAGACTGgaaatagtacagtacagtacagtacaggagatGAGAATTCATATCAATACTTAGCATTACTCACTGTTTACATCATTAAAACTCTGCAGCATCACAGATGGAGCACCGGGACctttacactgtagaataacatGCTGTTTGTTCGGGCTGATGTCTGCATCAAAGAACGCGCATGCTTCCTGGTTCATCTCACAGGTCAAACATCGTTGAGAGAACAGACCAATAGTAGACGCACTGTACACGTGTCTCTTTTGTGGGGAGTCTTGAGTACTGATAAAATATATGGTTTGCTCCCCCTCATCATAAGCTAatatcttggtcacctcccagttGCCTGACGTCAAGTGACGGACATCATTTTGATCACTTCTGAACTGAGAAAAGAcaaattg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU665721 False 1257 lncRNA 0.40 5 20225712 20227864
TU665723 True 1192 lncRNA 0.39 4 20225712 20227641

Neighbor

gene id symbol gene type direction distance location
LOC118965349 NA coding upstream 62817 20162080 ~ 20162895 (+)
LOC110527453 en1 coding upstream 127649 20093794 ~ 20098063 (+)
LOC110527452 LOC106575339 coding upstream 160732 20062976 ~ 20064980 (+)
LOC110528807 LOC106574429 coding upstream 196937 20017855 ~ 20028775 (+)
LOC110527448 LOC106574424 coding upstream 267402 19917445 ~ 19958310 (+)
LOC110527457 NA coding downstream 82199 20301287 ~ 20315887 (+)
LOC110527460 LOC106575256 coding downstream 299564 20527428 ~ 20539663 (+)
LOC110527464 LOC106575252 coding downstream 406271 20634135 ~ 20658344 (+)
LOC110527471 LOC106574225 coding downstream 632940 20860804 ~ 20868580 (+)
LOC110527474 LOC106575156 coding downstream 641599 20869463 ~ 20873915 (+)
G583498 NA non-coding upstream 107605 20117782 ~ 20118107 (+)
G583447 NA non-coding upstream 144521 20080873 ~ 20081191 (+)
G583444 NA non-coding upstream 145862 20079639 ~ 20079850 (+)
G583413 NA non-coding upstream 167537 20056890 ~ 20058175 (+)
G583398 NA non-coding upstream 184010 20041501 ~ 20041702 (+)
G583600 LOC106575263 non-coding downstream 3717 20231581 ~ 20233414 (+)
G583603 NA non-coding downstream 7797 20235661 ~ 20236582 (+)
G583626 NA non-coding downstream 39031 20266895 ~ 20267139 (+)
G583634 NA non-coding downstream 50479 20278343 ~ 20278589 (+)
G581976 LOC106581475 other upstream 1248713 18976678 ~ 18976999 (+)
G580997 NA other upstream 1732803 18492227 ~ 18492909 (+)
G580365 NA other upstream 2408864 17813342 ~ 17816848 (+)
G580315 LOC106575303 other upstream 2545044 17670275 ~ 17680668 (+)
G583605 NA other downstream 11047 20238911 ~ 20239797 (+)
G584643 NA other downstream 852964 21080828 ~ 21082615 (+)
G585573 NA other downstream 1725165 21953029 ~ 21953269 (+)
c7h10orf53 cssa17h10orf53 other downstream 2128719 22356500 ~ 22360232 (+)
LOC110527523 stat1-2 other downstream 2458625 22684527 ~ 22722539 (+)

Expression


Co-expression Network