XLOC_025227


Basic Information

Item Value
gene id XLOC_025227
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 18670824 ~ 18672291 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052636
CGCACCCACCTGCATAACATGACAGATGGAGAAGGTGTGAGACAGAAATTGCATTAATTCCAAGATTTTAAAAAGCCAAAACAATAAGACTAAAACAaggaagcaaacaaacaaaaacattgcttggagtaaaataaatgttaactgaAATGTGATATacaatttacagttgaagtcagaattattagcccccctttactttattttttaatttgttttaaatattttacaaatgatgtttaacagagcaaggaaattttcacagtatttctgataatattttttcttctagagaaagttttatttgttgtatttccgCTACAACaaaagcagttataaatttttaaaaaaaaagttttaaggtcaaaattatttgcccctttaagctatattttgtttcgaGAACAtgccatcgtcatacaataacttgtctaattaccctatcctgtgtagttgacctaattaacctagttaagcctttaaatatcacattaattgtcttgaaaaagatttagtaaaatattatttactgtcatcatggaaataataaaataattcagttatcagaaattagtcattaaaagtattatgtttagaaatgtgctgaaaagatcttctctcccttaaatagaaattgaggggaaaaaataaacaagggagctaataattcaggggggttaataattcagattGCAACTGTTATTTCATTCAGTTAccaagtaaacttttttttagtattgtttaaaataaaaaaaaagtaaaacaagcaaataaagtAATCAAAACTAGATGGACATtttggaaaaataataaaaacacaaacaataaacagTAAAATGGTCAAACTTCACATTAAGATTTCATTTGTGAACATGAGTTCACTGCATTAACATAAATGAACAGAATTTGTGAAAAGATCCTACagtataaatgttaatttctgttttaagctataaatatgaatatttagcCAAGGCTCTGTAAACTAACATGAATAACCAATGaacaattgtatttttattaagtaaCATCAACAAAGATTAATACGTGTTTTAAAATGTACACTACAGTTTgggttaactaatgcattaactaactaatgttaacaaaaataactgtacaactcatctattatttgttcttatTTTAGTGTGAATCATCACTTGTAATATGGACATGGTTTATTTGACTGAGATGAACTCACTTACTGGCCACCAAGTCATGTTTTTGCCAGCTAGAAAATATCCATCCACTGTGCTCCTCTTGGTCTTCCACATGGACTGTTGGGTGAGCAAAGGTTATAAATATGCCATATACAAGATGTTAAGTCATAAATGtgataagtaaaatatttacacagcaatgtttttttattgagcATTGCAAAAAGAACAAGAATATAAAGCCTAAAGGGGTCACTGTATAATTACATGGTCATGATTGTGATTTCAGGAAACGTACCCACAAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052636 True 1468 lncRNA 0.29 1 18670824 18672291

Neighbor

gene id symbol gene type direction distance location
XLOC_025226 arhgap17b coding upstream 20184 18579806 ~ 18650640 (+)
XLOC_025225 cbx8a coding upstream 99709 18567560 ~ 18571115 (+)
XLOC_025224 cbx4 coding upstream 106794 18555899 ~ 18564030 (+)
XLOC_025223 tbc1d16 coding upstream 168794 18437397 ~ 18502030 (+)
XLOC_025222 gaa coding upstream 235249 18424244 ~ 18435575 (+)
XLOC_025228 narfl coding downstream 83940 18756231 ~ 18769951 (+)
XLOC_025229 AL772362.2 coding downstream 99237 18771528 ~ 18788485 (+)
XLOC_025230 fahd1 coding downstream 123279 18795570 ~ 18796559 (+)
XLOC_025231 tnpo2 coding downstream 134715 18807006 ~ 18839529 (+)
XLOC_025232 tmem104 coding downstream 168519 18840810 ~ 18923915 (+)
XLOC_025429 BX649540.1 misc downstream 11576448 30248739 ~ 30249036 (+)
XLOC_025218 NA non-coding upstream 473698 18189609 ~ 18197126 (+)
XLOC_025215 NA non-coding upstream 609041 18040613 ~ 18061783 (+)
XLOC_025203 CU207238.1 non-coding upstream 1208939 17395239 ~ 17461885 (+)
XLOC_025197 BX470185.1 non-coding upstream 1787520 16874401 ~ 16883304 (+)
XLOC_025188 CR388224.1 non-coding upstream 2297697 16373012 ~ 16373127 (+)
XLOC_025233 AL772362.1 non-coding downstream 195544 18867835 ~ 18867952 (+)
XLOC_025234 CU151886.2 non-coding downstream 220359 18892650 ~ 18892766 (+)
XLOC_025235 CU151886.1 non-coding downstream 245170 18917461 ~ 18917583 (+)
XLOC_025241 BX322663.3 non-coding downstream 640700 19312991 ~ 19313107 (+)

Expression


Co-expression Network