G584306 (LOC106575249)


Basic Information

Item Value
gene id G584306
gene name LOC106575249
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 20791722 ~ 20791953 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU666484
TCTTTGATGTTTTTCACCAGCGAGGCCTTCTTTAAGCTGTTTTTCCTCTCCACATAGTTAGAGGGGACGTAGCCGGTCCGGTTGGAGGTGTTCCTCACCTTCCACCACGTCTTGCTGTCATCCAGGAGCCACAGCCGCTCGTTTTTCCGGATGTCAAGTTCTTGTTCCTGCTGAGCCGAGTAGTCCCACTTGGCTATAACTATCACCTCCTCCGTCATTTTTCATGGAGTCc

Function

NR:

description
cytoplasmic protein NCK2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU666484 True 232 lncRNA 0.51 1 20791722 20791953

Neighbor

gene id symbol gene type direction distance location
LOC110527464 LOC106575252 coding upstream 133378 20634135 ~ 20658344 (+)
LOC110527460 LOC106575256 coding upstream 252059 20527428 ~ 20539663 (+)
LOC110527457 NA coding upstream 475835 20301287 ~ 20315887 (+)
LOC118965349 NA coding upstream 628827 20162080 ~ 20162895 (+)
LOC110527453 en1 coding upstream 693659 20093794 ~ 20098063 (+)
LOC110527471 LOC106574225 coding downstream 68851 20860804 ~ 20868580 (+)
LOC110527474 LOC106575156 coding downstream 77510 20869463 ~ 20873915 (+)
LOC110528809 LOC106575158 coding downstream 82299 20874252 ~ 20893679 (+)
LOC110527473 LOC106575157 coding downstream 101855 20893808 ~ 20941725 (+)
LOC110527479 LOC106575163 coding downstream 241917 21033870 ~ 21044932 (+)
G584293 NA non-coding upstream 17210 20773117 ~ 20774512 (+)
G584289 NA non-coding upstream 23419 20768022 ~ 20768303 (+)
G584288 NA non-coding upstream 23899 20767332 ~ 20767823 (+)
G584282 NA non-coding upstream 26654 20762187 ~ 20765068 (+)
G584262 NA non-coding upstream 64293 20726989 ~ 20727429 (+)
G584313 NA non-coding downstream 11264 20803217 ~ 20803476 (+)
G584320 NA non-coding downstream 22973 20814926 ~ 20815142 (+)
G584323 NA non-coding downstream 29846 20821799 ~ 20854705 (+)
G584335 NA non-coding downstream 44482 20836435 ~ 20837578 (+)
G584616 NA non-coding downstream 239506 21031459 ~ 21031684 (+)
G583605 NA other upstream 551925 20238911 ~ 20239797 (+)
LOC110528807 LOC106574429 other upstream 769995 20017855 ~ 20028775 (+)
G581976 LOC106581475 other upstream 1814723 18976678 ~ 18976999 (+)
G580997 NA other upstream 2298813 18492227 ~ 18492909 (+)
G580365 NA other upstream 2974874 17813342 ~ 17816848 (+)
G584643 NA other downstream 288875 21080828 ~ 21082615 (+)
G585573 NA other downstream 1161076 21953029 ~ 21953269 (+)
c7h10orf53 cssa17h10orf53 other downstream 1564630 22356500 ~ 22360232 (+)
LOC110527523 stat1-2 other downstream 1894536 22684527 ~ 22722539 (+)
G586685 NA other downstream 2218108 23010061 ~ 23015120 (+)

Expression


Co-expression Network