G584335


Basic Information

Item Value
gene id G584335
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 20836435 ~ 20837578 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU666516
TTTGAAACATAACTAATACAATGTTGCAAAGAATATTAGCAAAAGCGCAAACACCCATCTCTGTCGTAGCCTACCAAGCGGCAATGGGCTATTGTATTGTACTGCCATTGACAAAGCCACGGAGGAGACAGAAAACCGCATGGACAAACACAACAATACTATTCTACTTTCTCGGCGCCGAATCCACGAGCATTATTCTGACTGCTGTATTTTAGCATCTAAAAAATAACAATCTGAATCCGCTCGTAACGGTGTCATTAACCAAAATCCACAAATGCCAGTTATTACCAACCGCACCTCCCGTCAAGCTAGCAACCATAACTTTGCGCTCAGTTCGTCAGCAGTGTTCTTACCTTGGTGGTTTCTCCAGTTGAATCTGATTATCAGCTCGGGAATTTGCAAAAGTAGTCTTCGATATTCACTTTCGAGGTCTAAAAGTTGACGTTTAAAAACCAATACGATTGGTTAtctttttttccttctttttttcaaCTCGCTGGGTTGCtcgtctcctcctctacctccagctCAACCAACTGCCTTGAAATGTGACGTCACGCCTGCCAAAAGCAtGACCTGCTCTGTGAGGCTCCTCTGACTGAGTGCTGGCGTGTTTGTCAATGCCTGTCTGCCGTTGCTGTGACCCCCCTGATGAGAGATGCGGTTAGACGTATTGACTCGTGCTCAGCTTCCTCCCTCGCCACAGCATCAGCCACAGAGCTAACTGGATATTGGATAAATAGACAGGCAGGACCTTCAATATCATGTGAAGGACACCATCATGTTCTCTCCCTGGAtttctcccaaatggcactctattccctacacagagcactacttttgactagagcctatagggctctggtcaaagg
>TU666518
CCATAACTTTGCGCTCAGTTCGTCAGCAGTGTTCTTACCTTGGTGGTTTCTCCAGTTGAATCTGATTATCAGCTCGGGAATTTGCAAAAGTAGTCTTCGATATTCACTTTCGAGGTCTAAAAGTTGACGTTTAAAAACCAATACGATTGGTTAtctttttttccttctttttttcaaCTCGCTGGGTTGCtcgtctcctcctctacctccagctCAACCAACTGCCTTGAAATGTGACGTCACGCCTGCCAAAAGCAcagtGACCTGCTCTGTGAGGCTCCTCTGACTGAGTGCTGGCGTGTTTGTCAATGCCTGTCTGCCGTTGCTGTGACCCCCCTGATGAGAGATGCGGTTAGACGTATTGACTCGTGCTCAGCTTCCTCCCTCGCCACAGCATCAGCCACAGAGCTAACTGGATATTGGATAAATAGACAGGCAGGACCTTCAATATCATGTGAAGGACACCATCATGTTCTCTCCCTGGAtttctcccaaatggcactctattccctacacagagcactacttttgactagagcctatagggctctggtcaaagg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU666516 False 872 lncRNA 0.46 2 20836435 20837578
TU666518 True 560 lncRNA 0.48 2 20836750 20837578

Neighbor

gene id symbol gene type direction distance location
LOC110527464 LOC106575252 coding upstream 178091 20634135 ~ 20658344 (+)
LOC110527460 LOC106575256 coding upstream 296772 20527428 ~ 20539663 (+)
LOC110527457 NA coding upstream 520548 20301287 ~ 20315887 (+)
LOC118965349 NA coding upstream 673540 20162080 ~ 20162895 (+)
LOC110527453 en1 coding upstream 738372 20093794 ~ 20098063 (+)
LOC110527471 LOC106574225 coding downstream 23226 20860804 ~ 20868580 (+)
LOC110527474 LOC106575156 coding downstream 31885 20869463 ~ 20873915 (+)
LOC110528809 LOC106575158 coding downstream 36674 20874252 ~ 20893679 (+)
LOC110527473 LOC106575157 coding downstream 56230 20893808 ~ 20941725 (+)
LOC110527479 LOC106575163 coding downstream 196292 21033870 ~ 21044932 (+)
G584320 NA non-coding upstream 21293 20814926 ~ 20815142 (+)
G584313 NA non-coding upstream 32959 20803217 ~ 20803476 (+)
G584306 LOC106575249 non-coding upstream 44482 20791722 ~ 20791953 (+)
G584293 NA non-coding upstream 61923 20773117 ~ 20774512 (+)
G584289 NA non-coding upstream 68132 20768022 ~ 20768303 (+)
G584616 NA non-coding downstream 193881 21031459 ~ 21031684 (+)
G584617 NA non-coding downstream 195764 21033342 ~ 21033590 (+)
G584644 NA non-coding downstream 245934 21083512 ~ 21083810 (+)
G584645 NA non-coding downstream 246883 21084461 ~ 21085015 (+)
G584671 NA non-coding downstream 290326 21127904 ~ 21128197 (+)
G583605 NA other upstream 596638 20238911 ~ 20239797 (+)
LOC110528807 LOC106574429 other upstream 814708 20017855 ~ 20028775 (+)
G581976 LOC106581475 other upstream 1859436 18976678 ~ 18976999 (+)
G580997 NA other upstream 2343526 18492227 ~ 18492909 (+)
G580365 NA other upstream 3019587 17813342 ~ 17816848 (+)
G584643 NA other downstream 243250 21080828 ~ 21082615 (+)
G585573 NA other downstream 1115451 21953029 ~ 21953269 (+)
c7h10orf53 cssa17h10orf53 other downstream 1519005 22356500 ~ 22360232 (+)
LOC110527523 stat1-2 other downstream 1848911 22684527 ~ 22722539 (+)
G586685 NA other downstream 2172483 23010061 ~ 23015120 (+)

Expression


Co-expression Network