G584555 (LOC106574229)


Basic Information

Item Value
gene id G584555
gene name LOC106574229
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 20892522 ~ 20893678 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU666783
TCCATTCCACAGCTGATTTATTTCACCAAGCCTCATTTTCACAACTTCTGAATCTTTTTTTAGTGTTATGATGCgctcttaaaaaaaaatattcatacaCTTCCATATGGCACAGCATCGCCAGTGTTGGACAACATTAGAACGTCAGAGCGTTTTGGGGGAAATTCACAcacttaaataaataaatcataaaaaATTAACTAGACACCATATCATACATACAAAGTCTACACATTGAATACAGTAACGTTCTGTAACAACACAttgtaaaatgttttatttctctgTACAAATACTATTTGACATTTCACAGATATGACTTCATGATATATATTTGGCCAACAGAAATTATTTGTTTGACTCAAAATCTAAATTCACATTATTTTCCATTTGGCTGTAGTCGATTCACCAAGCTAGTTTTGAGATCTTTGCTGCCTTTATTATATCCATAACTGTCTTAGTTTATCAATTACAGCTAACATATATTGAACATCATGTTCATTTATATTTTgagtaaactatccctttaatgtttATTTTTACGCAACACTTCTTCAGCACTCTCTCCATTCTCCACATTTCCAACCAAGCGGATGCCTGGCTCGTATCCAACAAACCTTTCTTACTTCTTTGGCTGACATTACACCACTCCAGAAAACAACAGGCTCTTTCCCACTGGAgccacacacacaagaacacatacagacacacacacacaagaacacacacatacagacacactcaTGTTCTTTTTGTCTCTCACATTTCTctttctatctcacacacacactcaaacacaaacacagatagATGTAGCTTAAGCTGATGAGTCAGTCCATGGTTTCTACATGGTTTCTCCACCCTTACACCCAGGAGTCAGGGGATCCAGTGTACTGGTTAGCCTTCTGAGAAGGCCTCCTCGTGGTGGAGTAGAAGTCCACGTAGTTAGCGGTGTTGGTATTGGATTTCAGTCTGTTAGGTTGGGAGGTGTTGTATCGCTCTGTGGAGGTCAGGTTCTCTGGCTCGTCCTGGTAAGGCCCAGGCTCCTCCTCCCCGTAGCCGTGCGGCGATGACAGATACATTCTGTAGTTGTTGTAAGTGTTCCTATCCAGCTCGTCGGAGTAGAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU666783 True 1127 lncRNA 0.40 2 20892522 20893678

Neighbor

gene id symbol gene type direction distance location
LOC110527470 LOC103366558 coding downstream 53123 20838415 ~ 20839399 (-)
LOC110527469 LOC106574449 coding downstream 55167 20780524 ~ 20837355 (-)
otos2 LOC106575250 coding downstream 114469 20772867 ~ 20778065 (-)
LOC110527467 LOC106574445 coding downstream 127412 20759004 ~ 20765110 (-)
LOC110527466 LOC106574444 coding downstream 215574 20654190 ~ 20676948 (-)
trnat-ugu-34 NA coding upstream 37430 20931108 ~ 20931180 (-)
LOC110527476 NA coding upstream 49259 20942923 ~ 20949096 (-)
LOC110527478 LOC106574231 coding upstream 58299 20951977 ~ 21021196 (-)
ly75 ly75 coding upstream 152542 21046220 ~ 21079993 (-)
LOC110528811 LOC106575164 coding upstream 187120 21080798 ~ 21110934 (-)
G584542 NA non-coding downstream 17952 20874310 ~ 20874570 (-)
G584501 NA non-coding downstream 18611 20871868 ~ 20873911 (-)
G584500 NA non-coding downstream 86580 20805733 ~ 20805942 (-)
G584490 NA non-coding downstream 99417 20792872 ~ 20793105 (-)
G584618 NA non-coding upstream 139883 21033561 ~ 21033784 (-)
G584673 LOC106574235 non-coding upstream 144628 21038306 ~ 21039785 (-)
G583661 NA other downstream 642537 20215649 ~ 20249985 (-)
G581174 LOC101077481 other downstream 2657484 18217158 ~ 18235038 (-)
G581089 LOC106575297 other downstream 2849142 18042927 ~ 18043380 (-)
G585240 LOC106575179 other upstream 527776 21421454 ~ 21424585 (-)
LOC110527499 LOC106575189 other upstream 623717 21513832 ~ 21583054 (-)
LOC110527506 LOC106575199 other upstream 1199134 22089741 ~ 22163995 (-)
G586414 LOC106574278 other upstream 1569530 22463208 ~ 22470518 (-)
LOC110527522 LOC106575212 other upstream 1716483 22609884 ~ 22620248 (-)

Expression


Co-expression Network