G584714


Basic Information

Item Value
gene id G584714
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 21132659 ~ 21137506 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU666969
CTGATTCATGGTGGGTTTTTattcaaatgtttttataaaggAAAGCACAAGGATAAGATTGTTCTACCAATCTAGTGAAACAATGGCTGTAACATACATAaggaaacaaaaatacaaaatgatTTTATTTTTCTAACTGATGATACCCAGCAGCATCATCACCCAGAcatgtaaaacaaacaaaaaaaaaatctatcttTCTGCATAAATTACTactatttcattttatttattgtCATCAGCCAGTCTATATCACACAAGTGTTGGTTGAATTTGCTGTACAACTAGCCTATTGATCCAGACACAGAATTGCACTTGGTTCAGACATCGCTAGCTATGCAAGACTACAAATAGTATGGTTGCAATTTAAACTTCCATCTTTCAGACttctacaacccccccccccccccccccccccccctcaccacatgAACTGCCAACACAAAGTCCCATactgagaaggtgtgtgtgtgtgtttcaagggAAGAATAGATCAAGACTAGCCGCCTACACTACCACCTGGTGGGTTTGCGTGTTCCtcttttataaaataaaaaacccCCGCCTCATTCCCCAGCCTATTGGAACCTCTGATCGACAAGCAGCacgttgtttgtttttttttaactttgGAGACTCCAAAACTAAGGCGGAGCTAAAAACCGCATTCCACCAGTAGCAATGTTCATATCggaaaaacacaacaaaaaacaAGATTCAGCATGATACTATACTAAACAAAACAGAATGTTTCTTTACTTGAGGACAGAGTAGTAGGAGGAAGAATAGTAAAAATTGCTATTGGCCAGCTCCTGAGCTTGGCTTTGGATGCGTCCCAAATCGGACCTTATTTTCTTTATGGTGCAATGCTTttgacccatagagatacatagaGGACTCGAGTGCCCAAAAGCCCATTTTAGCATTggcagcaccattgaggactttcaccattttgaagtagtcaactgggtgggacttccaatgggttaaagggatacttcgggattttggcaatgaggccctttatctacttctccAGAGTCAAATGaatttgtggataccatttttatgtctctgtgtccagtatcaatgaagttagaggtagttttgcaagccaatgctgactagtgttagcgcaatgactggaagtctatgggtatctgctagcatgctagtagataaagggcatcattgccaaaatcccgaagtatccctttaacccattggaagtcccacccagttgactacttcaaaatgctCTCACAGACGCCATAATGGGATAGACACAATGATGTGATGTCTATCTaactatgtttttatttatttaacctttattaatctaggcaagtcagttaagaacaaattattatttacaatgacggcctacagtggattaacagccttgttcaggagcagaacgacagatttttaccttgtcagctcggggattcgatccagcaaccttacggttactagtccaatgtttTGAACGTGAAAAGCCTAtgggtcaaaagtaatgcactacataagAAAAAGGGTGCGATTTGGTCCGCAGCTTTTGTGTTCTTCTCTGGTGAGGCGGGCTGGACCTGCAAACCCAGCCGTACCAGCCCAGACAGAACTCTGAGGTAGATAAAAACCAGTCACACATGACCACACATGGTGACCATTCAAGATGACCATTCAAATGTTCTTTAAAGACAACCCCGTCAATTTAGCGTAAAGTAAAACAGATTGTAATTTCACCATTAAAGTTAAGCATTTTCTATTAATATTACTGTATCTGTTGAAGTAAAAAATAGCAGAGAAAAAAGTTTAACCGCCTTGACGTTACCTCACAATTTCAAGCTTGCATTTCTTTTAAATCTATacgtgttttttttatttgaattgtAGGCTCTCTCGCCTTAATTAGGGAGATGAGATCAGTAGGTGTAGCATTTGATGGAGGTTCACATCCTCGGCTGTGTGTGAAGTATGACAAAACAGGACACCTACCCTGTCAAAGTCTAAAGAGACCTTACTATGGACTGACAGGAGTTCTAATTAAGAGTGGCTGTTCTTTTTAATGTATCCTGGTTAGACCAGGCTGAATACTGTGATCACCATGAAGTGAAACAGTGAAACGTCAGGGAATCAGTTCGGATTCTGCCAGGCTATGTAAAATGACTTATGATGTTAGAGGAAGGCACATTATCCAACCCATCATCTATTTGGCAAAACATCTGCTTCTTTATCAGTTCTCTATTCATAGATTGATTGACAGCTGCCAAACGGCCAATCCTACATATTTAATCTGATACAGAAAATCATGTCAGACATTAACCCTAAAAGCCTAATTGAATGATAATATCTTATAAAGACCAAAAATAAAAACCAGTAACACCTCACCAAATGAACACTTTTTGCAAGCAACATGTTTTTCATCATATATCTTGGCTAATaaactacctataaaacccattGGAAATCTCTTTTTCCTTAAGTCAACAGATTCCACAAAAAAAAAGAATCAATCTCATGCATCTTTTAACATCACGCTGTAGGCTACTTGCCCCATTGCATCCACTTGGAGAATCCGTGGTAAAAAATACACGTCTTTTCGTTtatcaaaataaaacattttttttcctgtTTTGAAGGGGGGGGAAATAATTGTTGGTTTTGTCCATTTTTACAGCTCTGTCTTCGTTTTACACACCATGGTATCATTGATGTTGGTTCCATCATACACAGTTGTTTGGTTGAAGCTGTGCAAAAGAGTTCTTACTGAAGTCTGGTCTGGTCCAATCAGGAGAGGCTGTGACTGTGACTCATGAGTCAGCGATCACAGCATCCATTACTGCTCACAGAAGTCACCTTACTTGCTCTGTTGACTGTAGGGAGACGAATTGTTGGACGAATCCATTTGCTGCTGTGAACCATTTTCCTGAAGAGGGAAAAACTGTGTAACTTCACATCTTATTATCGTGTATTAGCACCATCAAGTAAGTAATGGCATGGGATGTAAAAATTGTATGTAAAATGGCTGTACTCATGATGAGACATGGATGAATGAGAGGAGATCAACACAATGAGATGGCAAGGACGAGCCTTGGAACTTACGGCTGTCTGCTGCATGTGGGCGTACTGAGGAATATAGGCTGCCTGGACTGCAGCGTTGGCTGAAATATACTGCTGTCataagaaaaacaacaacatattagATACTGTACCCCTCAGAAGTCAGCCAACTCCCAAATCACCGCCTAGTCCTTAGCCTCTGTGCACTTTAGATCGGCGTTTGCATCAGGTAAAATGAGACTAACTAAATTGCACCTCCCCCTTCCCAGAATGCCCCTCACCGCTTTAGATCTGTGTTTGCATCAGGTAAAATGAGACTAACTAAATTGcaccttccccttcccccccctCACCGCTCCACTGCTGCCCAATGAGAGATGGCCCATCTGCTGTGTCATGATGGCGGTGGGCTGCATTGTCATGGAGTGGTCCACAGAGGGCGACATTACAGcctgctgtagcagagagagagacagagattataATTCTAGAATCAATACAAGGTCATCCTCATACTCAAACCCATTGAGGATCAATGGAAGGTCTGCAGGCAAAAGTATCTGGCTTTAAAATGATTGGAATTTGTGGTTAAGTTTAACAGTAATAACTCCTTCATAAAACTGTTTCTGTACAGAGGTGAATAGGGACTGGTTAGACCAAGTGTAGCGCTGAGCGATTAACCGAAATGTTGgttatttaaaccattttaaacAACTACTTGACTGACGTCggttagttgttgttgttggtgagcTCGATGTGCAGTTTCTGTAGaaataaatcagatccagcctgaactgtgcgatgtacTCGGGAGTTGTAGGTTCCAACAAGCCAATATTCGACATAGTTTAGCGAagaaaacatggtaattaactacaatgaccataatccattgtgtGCCCGGTTTAAACTTGTCCGATCTGTGCGGAGTTGACatggagacagagaacagagaacagagaaagtTTCGCAAGTTTGAAAATGCaggatctaagtgattgatagttggttttcagcagtcataaaaagtatgccttatttactttgaatcaaatcaaattttatttgtcacatgcaccgaatacaagcttacttacaagctctaaccaacaatgcagttttaagaaaatacccccaatctcaaaaagcactaatcgctcagcactaaccAAGTGAAACCTGTGACTTCAAGTTTGTTAAATTAATCAGACAAGCTCAGCACCCCccgaaaatacatattttttaggCCTTAGGCCATCTGTATAAGCCAAAACTCCTTGAGGGAGTGCACCATTTCCTTGTCAAAATGAGgggaaacagacacagacacttgTTCTACTTGAAACCATCTGCTGAGAGATGCAAATGGCTTCAGTCATAAGACCGTGTCTGCTGCAGGCATTTCCTGTTGGCTCCATACAGCAGTGGGAGCAGAGAGCTAGAGGCCAGAGAAGCACAGTCGTATTTCGGTTCCAGATCACACCCTATtctctcaaactcaactctggaccatttttcattgttcccctctaatcggactgatttagacctgggacacctggtgggtgcaattaattatcaggcagaacagaaaaccagcaggctccggacctagTAGGGTAAGAGCTGAATAGCCCggccctgttccctacatagtgcacaact

Function

NR:

description
RNA-binding motif, single-stranded-interacting protein 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU666969 True 4734 lncRNA 0.41 2 21132659 21137506

Neighbor

gene id symbol gene type direction distance location
LOC110527479 LOC106575163 coding upstream 87727 21033870 ~ 21044932 (+)
LOC110527473 LOC106575157 coding upstream 190934 20893808 ~ 20941725 (+)
LOC110528809 LOC106575158 coding upstream 238980 20874252 ~ 20893679 (+)
LOC110527474 LOC106575156 coding upstream 258744 20869463 ~ 20873915 (+)
LOC110527471 LOC106574225 coding upstream 264079 20860804 ~ 20868580 (+)
LOC110527484 LOC106574241 coding downstream 39477 21176983 ~ 21183344 (+)
sumo1 sumo1 coding downstream 108852 21246358 ~ 21249349 (+)
LOC110527488 LOC106575173 coding downstream 177500 21315006 ~ 21337432 (+)
LOC110527489 LOC106575175 coding downstream 202186 21339692 ~ 21354616 (+)
LOC110527490 LOC106575177 coding downstream 217630 21355136 ~ 21364322 (+)
G584711 NA non-coding upstream 1431 21130910 ~ 21131228 (+)
G584671 NA non-coding upstream 4462 21127904 ~ 21128197 (+)
G584645 NA non-coding upstream 47644 21084461 ~ 21085015 (+)
G584644 NA non-coding upstream 48849 21083512 ~ 21083810 (+)
G584617 NA non-coding upstream 99069 21033342 ~ 21033590 (+)
G584792 NA non-coding downstream 106468 21243974 ~ 21244173 (+)
G584795 LOC106575172 non-coding downstream 113768 21251274 ~ 21254524 (+)
G584830 NA non-coding downstream 130338 21267844 ~ 21268087 (+)
G584808 NA non-coding downstream 251789 21389295 ~ 21392225 (+)
G584820 NA non-coding downstream 256377 21393883 ~ 21438876 (+)
G584643 NA other upstream 50044 21080828 ~ 21082615 (+)
G583605 NA other upstream 892862 20238911 ~ 20239797 (+)
LOC110528807 LOC106574429 other upstream 1110932 20017855 ~ 20028775 (+)
G581976 LOC106581475 other upstream 2155660 18976678 ~ 18976999 (+)
G580997 NA other upstream 2639750 18492227 ~ 18492909 (+)
G585573 NA other downstream 815523 21953029 ~ 21953269 (+)
c7h10orf53 cssa17h10orf53 other downstream 1219077 22356500 ~ 22360232 (+)
LOC110527523 stat1-2 other downstream 1548983 22684527 ~ 22722539 (+)
G586685 NA other downstream 1872555 23010061 ~ 23015120 (+)
LOC110527540 LOC106533352 other downstream 2473846 23609520 ~ 23621369 (+)

Expression


Co-expression Network