G584795 (LOC106575172)


Basic Information

Item Value
gene id G584795
gene name LOC106575172
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 21251274 ~ 21254524 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU667053
AACGTCATCGTTTTATTCTGTGAAACTGTACAAGATTACAAGCCATATTGCATTAAGAAACATCAAGTAGAAACAGCAAGATTATAAGTCTTATAAATACATATGTTCTTTTGAAAAAGGGTGAATATTTACAGAATGTGGCAATTTAATAGCAACATCTTACAGCTagactacatcccaaatggcaccctattccctatgtagttcactacttttgaccaggtcccctagggctctggtcaaaagcagtgcactatatagggaatagggtgccatttgggacatacgcactatacacaagcataatacaactttttttttaaaggtgtgTTAGACATTTCTCTCTGTGCCAAGATGAATGTTCTCAGATGTCTGCAAGTTAGCGTAAAAGTAACATCAGCCACACGTAACAAAAACAGGAACATCAATTTAAAAAGTACAGAAGCAAGGAATGAAATGCACATATTCCAAAAACCTTTGGAATTCCTTGCAAAACTTAACATACATTGGTCTTGTCAGACATTAGCCCTGTATCCCTCGTTTCTTCTTGGATGAGAAACTCACGACATGATACAACATAGTTGAAAACATATTGAAAAGTCATGGCAAAACAGACTTTCTTTGTTGCTGCCGTTACATCACTGGGTGGCACATTGTGGTTTAAAAGTCACGTTTAAATGAGATTATAGAATGTTTTAAAATGTCATGGGGGGGTTACTGAAGAGTTAAAACCCTTCAAATAATGAACAAATGTTCAGTCAATGGCTCATAAGGTCGTCAGGAGGGACATTCTCAAAGTACAAGTACTTTTTTCAGAGTTCAAATGTCCTACGTCCAATAGGAGATGGGAAGGGATATGCTCAGTCGGTTTCATCAAAAatagatatttttttaaacacacaacTCCTCCACATTAAACTTCCACAAAGTTCATACGGTCGTCTCTCCTTGGTTGCGGTTACTGAGCCGTTTGTAAAACCTGCACCAACTCTGTAATGTTTTCCCTGACCAGATCCAGAACCCGGACGTGATGCCCACGATCATAGTCATCAGGTACTTGATCATGAACACCGTGAAGTCCGGGGTCATCGGGGCAAAGTTGTTGGCCGGGCACGGCACCGCGAAGCGCTTACACGTCTGCATGTGCCAGGTCTTCTCCCATTGGTCGCGGAAGGCCTGCTCGTAGAAGTAACAGGCGATGACGATGGTGGCGGGGACGGTGTACAGGACGCTGAACACGCCGATTCTCACCATCAGCTTCTCTAGTTTCTCCGTCTTGGTGCCGTCGTGCTTCATGATGGTTCTGATGCGGAACAGAGACACGAAACCGGCCAGGAGGAACGAGGTTCCGATGAAGAGGTAGACGAACAGGGGGGCCAGGACGAACCCTCGTAATGAATCCACGCTGTAGATGCCGACGTAGCACACCCCTGTGAGAAGGTCCCCATCCACCTGCCCCATGGCCAGGATAGTGATGGTTTTGACAGCAGGCACCGCCCAAGCCGCTAGGTGGAAGTATTGAGAGTTGGCCTCGATGGCCTCGTGACCCCACTTCATACCAGCAGACAGGAACCAGGTGAGGGACAGGATGACCCACCATATGGAGCTAGCCATGCCAAAAAAGTAGAGGATCATGAAGAGGATGGTGCAGCCCTCTTTCTTGGTGCCCTGGGCCACCGTCTTGTAACCGTCCTCTTTAAACTTGTCTATGCAGACCACTTTATCCTCCAAGAAGAAGCCTGCTGTGTAGGCCACCGCCACCATGAAGTAGCAGCCTGAGAGGAAGATGATGGGCCTCTCCGGGTAGCGAAACCTCCTCATGTCTACCAAGTATGTGAGCACAGTGAACAGTGTACTCACGCAACACAAGATAGACCAGATACCCACCCAGAGTTTGCCGAATTTCAGTTCCTCCTCGCGGAAATACATTAGTCCGTTGGGCTTGGTGGACTCGCATGGGGCACCACAGTCTTTCACCCCCAGGAATTTGTAGTTGAGGTAGGTTGGGACCTGAAGTTGTAGGGGACAGGAGAAGGGCTGGGCAGCAGGGCGACCGATGTTTGGGGGTAGGGTCATGAGCTCAGGCAGGTTGGGAGTGGGGTCCGAGGTAGGGATGTCCGTGTCTGAAGTGTTTTGACCCACACAGATCTCCCCAGCGCCGTGGACGGGGAAGTTCTCACAACGGAGTCTCTCTGGCCATTGAAACCCGAACTTGTTCATGAGCGCCTCGCAGCCCTGGCGTGCGCGCTCGCACAGTGATCGGCATGGGGGGATGGCCTGTTCTAGAACTGTGCACACCGGTGCGTACATGGAACACAAGAAAAACTTCAGGTCCATGGAACACTGGACCTTCACGAGCGGGTAAAACTGATGGACTTCCAGCCCCGCATCCTCCTGGTTTGTGTGTCCCAAAAGATTCGGCATGATAGTTTGATTATAGGCAATGTCCGTGCAGAGGGGGATGGAAATTGGCTGACAAAAACCGTGTTCTGGTATAGAAATTCCTTTCTCGCCATGATACTGACCGGTACACGGCTCCAGCATTAGACAAACAGTCACCAGCGCGCACCCCGTTATCCAAATCCACTCACAGGTTCTCCTTACCGCCATGATAGCAGCCCCTGTGTTCAGAATAAAAAAAGTGGCTTAGAATATTACCCCGGAGCTGCAAAAAGCACAAATCAATTTCAGTCCACAAAAGGTTGAAATGTCCTCTCTTCTCCCGTCTATATAAAAAGGGAGAGGAGCCTAAAGTTAAAACAAAGTTAAATGCTTGAAAAATGCCCTCGGTCGCTCTCCCCACATTCCTTATTCCAGTGTTCACAGAACTCTCCAAGAAAATGGAGGATTGCTGGTGAGGGATTTATTTATTCCAATCAAACCACTGAAAACCTGTGAAATTCCAAtagagtatttttttttttgcagttcgTTTCTTTACTGACCTGGTTCTTCGTATTGGAAACAAACGTATGACTTGAAAATGGAATGCGTTGACTAATTTCTTCCAGATACCCACAAATCTTCCTTACATCACATTATAGGTTGAAGCAAAATTGAAGTCTGCAAAATCTCATGGTTTTCCATCTCGCGTTTACAACTCAGCCAATGTTCAGCTCGAAGAGCATTGGTAGGCTATGCACTACGATTAACCCGGCTCAAAGTCTGTAGTAAAAGGCAAATCTCTTCCAAAAGTATACTACTCGTCAAACTATTTCTTCCCACAACGCTAAAATCGTGATCTGCTTTCT

Function

NR:

description
frizzled-7-A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU667053 True 3251 lncRNA 0.47 1 21251274 21254524

Neighbor

gene id symbol gene type direction distance location
sumo1 sumo1 coding upstream 1925 21246358 ~ 21249349 (+)
LOC110527484 LOC106574241 coding upstream 67930 21176983 ~ 21183344 (+)
LOC110527479 LOC106575163 coding upstream 206342 21033870 ~ 21044932 (+)
LOC110527473 LOC106575157 coding upstream 309549 20893808 ~ 20941725 (+)
LOC110528809 LOC106575158 coding upstream 357595 20874252 ~ 20893679 (+)
LOC110527488 LOC106575173 coding downstream 60482 21315006 ~ 21337432 (+)
LOC110527489 LOC106575175 coding downstream 85168 21339692 ~ 21354616 (+)
LOC110527490 LOC106575177 coding downstream 100612 21355136 ~ 21364322 (+)
LOC110527492 LOC106575178 coding downstream 114177 21368701 ~ 21374052 (+)
LOC110527491 LOC106574254 coding downstream 119678 21374202 ~ 21388754 (+)
G584792 NA non-coding upstream 7101 21243974 ~ 21244173 (+)
G584714 NA non-coding upstream 113768 21132659 ~ 21137506 (+)
G584711 NA non-coding upstream 120046 21130910 ~ 21131228 (+)
G584671 NA non-coding upstream 123077 21127904 ~ 21128197 (+)
G584645 NA non-coding upstream 166259 21084461 ~ 21085015 (+)
G584830 NA non-coding downstream 13320 21267844 ~ 21268087 (+)
G584808 NA non-coding downstream 134771 21389295 ~ 21392225 (+)
G584820 NA non-coding downstream 139359 21393883 ~ 21438876 (+)
G584881 LOC106575186 non-coding downstream 185826 21440350 ~ 21441601 (+)
G584919 NA non-coding downstream 276876 21531400 ~ 21531633 (+)
G584643 NA other upstream 168659 21080828 ~ 21082615 (+)
G583605 NA other upstream 1011477 20238911 ~ 20239797 (+)
LOC110528807 LOC106574429 other upstream 1229547 20017855 ~ 20028775 (+)
G581976 LOC106581475 other upstream 2274275 18976678 ~ 18976999 (+)
G580997 NA other upstream 2758365 18492227 ~ 18492909 (+)
G585573 NA other downstream 698505 21953029 ~ 21953269 (+)
c7h10orf53 cssa17h10orf53 other downstream 1102059 22356500 ~ 22360232 (+)
LOC110527523 stat1-2 other downstream 1431965 22684527 ~ 22722539 (+)
G586685 NA other downstream 1755537 23010061 ~ 23015120 (+)
LOC110527540 LOC106533352 other downstream 2356828 23609520 ~ 23621369 (+)

Expression


Co-expression Network