G584881 (LOC106575186)


Basic Information

Item Value
gene id G584881
gene name LOC106575186
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 21440350 ~ 21441601 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU667169
AATGTACAGTAGGTGATATTTTTGCAAACATGACATGCACAAAACCCTGTTTGAGTGATTGAAATAAGTACCAGCATTCTGTCTCAATATATGGGGAAAGATTTGTCCCAGCAAGTGTACTCAATAACTATAGCTAATGTAAATAAGCATGAAAAAGCTTTAGGTAAGCAGTTTTATTCACCATTGATAGAGACAGGGCAGAGGCTACTGAGAATACTGTTCTCACTTCTCAATAGCTTATCAAACATATTCCATGGACCTCTTCCTATGTGGGGTATTGGTactgtgtacgtgtgtatgtctTCTCTGTAGCGGTATAGGCATTTGTAAGGTGCAGGGCTCCTCTTGTAGGCACACGCAGGAGGTGACCAGCAGAGAGCCAGCCACCAGGTGTAGAAACCCCGCCGTCCAGCCACAGAATAGGGCATCTCCAAACTCCCAGCGTGGCACGATTGCCGGCACGGCCTCATCGAAGAACCGCATGACCGTCAGGTGAGCGATGTAAGACACAGGTATGAGACCCAGTATCCCTGCGACCAAGCACAATATCCCCCCCAGCATCTTCATCAATCTCTTCACCCTCAAACCCTCAGGCCCCTGGTTGCAGCTGTTGATCCAGTAGATTCCAGGAATGGCTAGCAGGAGACCCAGGAGGCCCGTGGCCACTGTTACACACATGAGGATCCGGGCTAGTTTGATGTCCGGAGGCAGGCCGAGGAGACTGTCATAGGGTCTGCACTCCAGAATTCCAAGGTCCTGCACCACACACGTCTCCCACAGGCCCAGCTCGTAGCTCTCCGCGGGCAGCAGGTCGGTGGACAGGGTCAGCCAGGTGGACATGATGGTGGTGGCCAGCGAGCAGATCCAGGCACCAATAGAGAAGAGGATCCCGAGGAGTTCCAGAACGCACACCCCCGGATCCATAGTGCTGCCCACTCTGAGAGGCCACTCTCTGGCTCAGCTCAGCTCTGGCTCCCGACTGCTTCTCTCTACTCCTGTCCTTCTGAACTGCAGCCAGTTGAAGCGAGAGGAAGCATACGGCCAGTAGGTTCCGATCGAGGCTCAATTTGTTCAAAAGACCGTACGCCCAATTAGGGTTTACAACTACCAGCATGGGCTGGGAGGGAGTAACTTCTTCAAACGATCAGTAGCTCACTCAAAACATGCACACATCATCTGCAGTTGAGAGGAGGAAAGTAGCGGCTTGCTGACATGTTGCCCTCCCCTTGGAGGCTCGCTTCCGACGCGGCTT

Function

NR:

description
putative claudin-24

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU667169 True 1252 lncRNA 0.52 1 21440350 21441601

Neighbor

gene id symbol gene type direction distance location
LOC110527493 LOC106574257 coding upstream 4015 21433912 ~ 21436335 (+)
LOC110528813 LOC106575179 coding upstream 7211 21404567 ~ 21433139 (+)
LOC110527491 LOC106574254 coding upstream 51596 21374202 ~ 21388754 (+)
LOC110527492 LOC106575178 coding upstream 66298 21368701 ~ 21374052 (+)
LOC110527490 LOC106575177 coding upstream 76028 21355136 ~ 21364322 (+)
LOC110527495 LOC106574258 coding downstream 1502 21443103 ~ 21452116 (+)
LOC110527497 LOC106575187 coding downstream 13146 21454747 ~ 21496011 (+)
LOC110527501 ralbb coding downstream 247735 21689336 ~ 21695194 (+)
LOC110527502 LOC106575193 coding downstream 296148 21737749 ~ 21744000 (+)
LOC100136615 LOC100136615 coding downstream 307739 21749340 ~ 21799872 (+)
G584820 NA non-coding upstream 1474 21393883 ~ 21438876 (+)
G584808 NA non-coding upstream 48125 21389295 ~ 21392225 (+)
G584830 NA non-coding upstream 172263 21267844 ~ 21268087 (+)
G584795 LOC106575172 non-coding upstream 185826 21251274 ~ 21254524 (+)
G584792 NA non-coding upstream 196177 21243974 ~ 21244173 (+)
G584919 NA non-coding downstream 89799 21531400 ~ 21531633 (+)
G584923 NA non-coding downstream 100523 21542124 ~ 21542360 (+)
G584959 NA non-coding downstream 153845 21595446 ~ 21595685 (+)
G584960 NA non-coding downstream 154623 21596224 ~ 21596434 (+)
G584962 NA non-coding downstream 160355 21601956 ~ 21602164 (+)
G584643 NA other upstream 357735 21080828 ~ 21082615 (+)
G583605 NA other upstream 1200553 20238911 ~ 20239797 (+)
LOC110528807 LOC106574429 other upstream 1418623 20017855 ~ 20028775 (+)
G581976 LOC106581475 other upstream 2463351 18976678 ~ 18976999 (+)
G580997 NA other upstream 2947441 18492227 ~ 18492909 (+)
G585573 NA other downstream 511428 21953029 ~ 21953269 (+)
c7h10orf53 cssa17h10orf53 other downstream 914982 22356500 ~ 22360232 (+)
LOC110527523 stat1-2 other downstream 1244888 22684527 ~ 22722539 (+)
G586685 NA other downstream 1568460 23010061 ~ 23015120 (+)
LOC110527540 LOC106533352 other downstream 2169751 23609520 ~ 23621369 (+)

Expression


Co-expression Network