G585425


Basic Information

Item Value
gene id G585425
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 21747682 ~ 21799873 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU667792
TTTGGAACAAAGAAGCAAAAGTACAACTTTATTTCTGTTACTTCTTGACAGTTTCAATCATGTGCATTGATTAGTACAATTAATGGACTGTATAGTATACAGTATGGTAGACAGAGGATGTGTCTCTCAGTTGCATTGGTTGGTGGTGCAGCAATAGGCATCAATGTCCTTGTTGCTTCCCAGCAGCAAGCATTCTGACATCTTCATGCATCTCTTGAAGTATGAGatagGAGTGGGGGCTTGAATAAGACCGTGCCGCAGGTGTCATGGTCAACACGGCAGGTCTCCACTGTGTTCCTGCAGCCTTTGCCAACACAACGGTTGCATTTCAGGCCCTCTCCTAAAGCTACACgccagcagcaggaggagcagagAAAAACATACAGCTTTCATCTTTCCTTTCTTCAGGAGTCTTTCGATCTGTCGTTCCAACAATAGAAAATAATGCCTCTATGTGGTGGGATTATACAATGTTCAACAATTGCAACATGTTATTTTGATTTATTTGAAATGTGCAGGAACATTCTGAAACCAACCATTTCACAAGCCCAGTAGCACAGTATCACGAGACAAAGTTATTAGGTGCTGTAGATAGTAGAGTAGTTGCTCACCTGATTGTGTTTCCTTTAGGTGTATTGAGcttcctttactctcctctccttctccttctccttttaTACAGCACAGTATGCTAATAAAGCTGCTATCTATGAGTCACTTGTGTGAGATTTTGGGCAATGGATTTACTCAGGTTTAGCACAAGCAGTGCCCTTTGTCTCTCTGTAAAAGAATGGAAATTCCCGGATTTCATGAGACAAAGGTTTGCAGTGTCGTGTTCCATACTGGGACATTCCAGGACATTGGGTTAGGAGAATTTCGAAATATTAAAGCGCAACAAAACAACTGACTAGTGTGCGAAGTTTATCTAAGAGGTGGTGTTGGATGATGAATCATTCATATCACATGTAAACAAGTTCATATTATGACATTTAGACATATGTTGAAATCAGGAACAAAAGGTTAAAATATCATTTTGCAATACTGAATGTATTTCATTGCTATTTGAACTGGGCTCCTGCCACACGCATACCAATGATACAGAAGGTGAGTAGAGGCCATGGGTCTTATAAGTTGCAGTTGTTCCAGTTGCAGCAGGTGACTCTCAGACCCTCGGTCACACCAAGCTTCAGGCACTCCATCATCTTGAAGCAGGACTTGTGGAAGGTGTTCtctggagaaatagagagagaaagatagagaggggggagagacatgatgatgacGATACCCAcagggcacagacatcagttcaacatctagttttgatttacatttggttgagttgtcaacttaCGTGAATTCAACACGAAATCAACAAGAACTGTCACcgtgtcattggatttaggttcaaagctGGGTGATAAAAAGAGGAAATGCCCTGACGTTGATGACCTTTTTCCAACCCAATCAGTTTTCtatgttgattcaacgtcatcacatagattCTTGTGGGGTTAAAATGACATGGGAACAACATTGACTCAACCAGTTTTTGTCCAGCGGGTAATGACTTTCGACTGAGTGATAATCTTGTAGGCCTACCTAGTAAATagatttctgttgtttgtgtgtgtatgtctttgaTGGATTTCTGGTTGGATTAATAAGGCACTGTGGCAGTGATTGTGGGTGTATGCCATGCCGACTGAATGGTGCTCGGACTCACCATAAGGGGAAGGGTAGGTCACTTTGGCACAGGCGTCCAGCTCGGGAGGACAGGTCTCCACAGTCCCCACACAATCACCACTGCCTGGCGTGGCCCGGACACACTTATGGCCCTGCAGGGCCTCacctgagagaggggggagagaaagagagagagagaaatagagaaacatTAACGAAAACCTGAGTAAACCTTGAAAGTCACTGGCCACAGTCATAGTGTGTAGCCTAGTGCACACTACTGACCTAGAGGGagggtttttttttatttgaacttTTGAAAAGAAAAACATTAGGATGGTTCAACATGAAGAGATATTTACCATAGATGACGGCCACCAGGAGCAGGAGACCAAAAGCAAAGACTTTCATGTTTGGATGTGGTTCTAAGAGAACGAACGACACATTTCAACAGTGTAACCTATATAGACACGACAGTTAACATATTGTTCAATACCTTTACAAGTCTTTGTGTCCTAGGCTCAGACAGACGTTTCAAACAGGGTCAAAAAAGTGTGAAGTCAGTGCCCTTTTGTCCATCTTACCTTCTGTACCTCTGCAGGTTTCAGTGTAACTCTCCTTCCTCCGGCCCCTCTTTTATTCAGAAatatgagactgataaacacaatGCTTTGGGAAAAGAACCCGATAAGAAAAGACATGTTCTTTTTAAAGCACGGACACAGGTGCAGTGTCAGACATGAGTACGTACAGTACTGGAATGGGTAGCCTACCACTCAAATGAAAGAATCATTGGGTTTAATATTCCTTAACTGTCATCGGCTGTAATTGTGTTGTAGCTGTGTGATTGCGCTGCGTCGCAGTTACAGGAGCTAAACACACTTTTTCATCTTCCACctacttttcattttttttaaagggttgaaaaaggagggtgggggagtaAAAAACAAGATGAACTATTTGAAATGAACCTGTAAAGCTTTGAAAATGACAACAAAAACAATGAAAAGAAAAAATGGGGAAATATAAAGAAACATTAGGCCTTCCTAACAAGCCAATGTGGTGGGTAACCTTGAAGAGAAGCCAAACCAAAGGATGAGGAGGCTGTGTAGCTTGCGCTGTGAACCTACCTGATGCTGCAGGTCagagatgggtcccattatgtctggcgaaaaccaaacactgcattccacagtaagaacctcataccaacggtcaagcatggaaGGTTGTCGTGTGATGGTTTggagatgctttgctgcctcaggatcTGGGCGACTTGCCTTAatatagaaggaaccatgaattattctctgtatcagagaattctacaggagaatgtcaggacATCTGTCTGAAAGCTgaagctgaagcgcagctgggtcatgcagcaagacaatgatccaaaacacacatgaaaatggctaaaaaagttttggaatgacctagtcaaagtccagacctaatctcaattgagatgttgtggcaggacttgaaacatGCAATCCATGCTTGAAACCCCACAAATGTCACTGAGTTACAGCAGTCCTGCATGGAAAGGTGAAACAAAATTCCTCCACATtgacgtgagagactgatcaacgaCTACAGGAAGcttttggttggagtcattgcaactaaaggtggcacaaccagttattgagtgtaagaggAAATTTACTTTTTCACATTGAGTGTTGGCATTGAGTGTTG
>TU667793
CCAGGCCCTCTGCAAAGCTACACgccagcagcaggaggagcagagAAAAACATACAGCTTTCATCTTTCCTTTCTTCAGGAGTCTTTCGATCTGTCGTTCCAACAATAGAAAATAATGCCTCTATGTGGTGGGATTATACAATGTTCAACAATTGCAACATGTTATTTTGATTTATTTGAAATGTGCAGGAACATTCTGAAACCAACCATTTCACAAGCCCAGTAGCACAGTATCACGAGACAAAGTTATTAGGTGCTGTAGATAGTAGAGTAGTTGCTCACCTGATTGTGTTTCCTTTAGGTGTATTGAGcttcctttactctcctctccttctccttctccttttaTACAGCACAGTATGCTAATAAAGCTGCTATCTATGAGTCACTTGTGTGAGATTTTGGGCAATGGATTTACTCAGGTTTAGCACAAGCAGTGCCCTTTGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU667792 False 3402 lncRNA 0.43 3 21747682 21755136
TU667793 True 448 lncRNA 0.41 2 21750307 21799873

Neighbor

gene id symbol gene type direction distance location
LOC110528814 LOC106575192 coding downstream 10759 21697817 ~ 21736923 (-)
LOC110527500 LOC106575190 coding downstream 62987 21673963 ~ 21684695 (-)
LOC110527499 LOC106575189 coding downstream 164628 21513832 ~ 21583054 (-)
LOC118965423 NA coding downstream 288657 21458900 ~ 21459025 (-)
LOC118965268 NA coding downstream 298879 21447707 ~ 21448803 (-)
LOC118965269 pnpla4 coding upstream 29291 21829164 ~ 21831559 (-)
LOC110527506 LOC106575199 coding upstream 289868 22089741 ~ 22163995 (-)
pudp hdd1a coding upstream 413750 22213623 ~ 22230742 (-)
LOC110512351 LOC106575201 coding upstream 562288 22362161 ~ 22368437 (-)
cd99 NA coding upstream 568780 22368653 ~ 22384989 (-)
G585367 ralbb non-coding downstream 51112 21689320 ~ 21696570 (-)
G585359 NA non-coding downstream 125750 21621135 ~ 21621932 (-)
G585332 NA non-coding downstream 176372 21570995 ~ 21571310 (-)
G585317 NA non-coding downstream 194974 21552495 ~ 21552708 (-)
G585306 NA non-coding downstream 212176 21535004 ~ 21535506 (-)
G585528 NA non-coding upstream 114581 21914454 ~ 21914657 (-)
G585557 NA non-coding upstream 141725 21941598 ~ 21941915 (-)
G585576 NA non-coding upstream 155466 21955339 ~ 21955558 (-)
G585745 NA non-coding upstream 271877 22071750 ~ 22072028 (-)
G586015 NA non-coding upstream 479182 22279055 ~ 22279455 (-)
G585240 LOC106575179 other downstream 323097 21421454 ~ 21424585 (-)
LOC110527470 LOC103366558 other downstream 908346 20838415 ~ 20839399 (-)
otos2 LOC106575250 other downstream 969617 20772867 ~ 20778065 (-)
G583661 NA other downstream 1497697 20215649 ~ 20249985 (-)
G586414 LOC106574278 other upstream 663335 22463208 ~ 22470518 (-)
LOC110527522 LOC106575212 other upstream 810288 22609884 ~ 22620248 (-)
LOC110527529 ngl1 other upstream 1008780 22807676 ~ 22812906 (-)
G586878 NA other upstream 1284617 23084490 ~ 23087137 (-)

Expression


Co-expression Network