XLOC_025236 (si:ch211-198m1.1)


Basic Information

Item Value
gene id XLOC_025236
gene name si:ch211-198m1.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 18936006 ~ 18967653 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049840
GGTAAACTGGTGCATAGGTTTGATTGTTTCATTGTTGCAGAACCTCGTTCATCTTCGTTTGAACAAAAAACACACGGAAACTCGCCTGTTTAGATCACCGAGAGACAAAAGTGTCTAGAATTGATGAACCGCATCAGAAGATTACAATTCTTACAGTGAATACCAGCAAGAATCGTTAAATCTCCACAAAATAGCACGCATAGCAAACAAAGCAGTTTACAAAACACGTCGGCGTTTCCCGACCAACGCACAGAAAAGCGGAGAAAACGCCTCTGCCACTGTTGAAGACTGGACTGAAACACTTTAGCAAGACGACAGACGATCTCCTTTTAGAATCTAAATACAGTGGATATAAAGCAACCCTCAAAACACAAGACACTTTCTAGATGAATACACGTTTGCTGAGAAAAAAGTAAACACGTGATTAGTCATGATAGCCTTCTTCATGCAACCTGGCCCTACTTTGCTTATGACATAATGTTGTGTTGAAAGACTTCCACTACAAGAATCCTACACAATCTGAGAACTTTTCTTGCTGTCTGTAATGGATTTTCTGGAGTATGATGACGCCATCGTTATTTTAATTACACCTGAAATGGCTTCACCCTCTTGTCAGGTAGAAGGAGTTTTAAGTTTCTCAGTGGTCCAGGTCCAGGCAGAGCGCTTGTTCTCCTCTTAATCAAAGCAACAGATGCGATTAGTCTGGAGCGGGTGGCGCAGGCGGCTCTACCCCTGGGTAATCAATTTGCAATGGCAGATGCTCACGGGGGGAAACTCGCCTGCTGCCCAACAGCTGTTCTCCAGAAAGTATCAACCATCCCTTTATTGACTCTCCTCTCATCTTGCTTTGAACTGGAGGCAGTAGCATGTTCTTCTTTTTGTAGATGGACATCAGAATATCTAAATCATTTGATTAATCAAATAGCTGCACAGAAGGATGCATTGTATATTTAGTCAGTcttaattaaaaactgtttacaGTCTGACAGTTAATTAAAAGCTATTGTTTAGTGAAATTGACATGTCGGCTTTCTCTTAGCCCCATCTTAACCTGTTACTGAGATACTGACCAGtcactgtaaaacatgctgggattcaca
>TCONS_00049841
AAACTGGTGCATAGGTTTGATTGTTTCATTGTTGCAGAACCTCGTTCATCTTCGTTTGAACAAAAAACACACGGAAACTCGCCTGTTTAGATCACCGAGAGACAAAAGTGTCTAGAATTGATGAACCGCATCAGAAGATTACAATTCTTACAGTGAATACCAGCAAGAATCGTTAAATCTCCACAAAATAGCACGCATAGCAAACAAAGCAGTTTACAAAACACGTCGGCGTTTCCCGACCAACGCACAGAAAAGCGGAGAAAACGCCTCTGCCACTGTTGAAGACTGGACTGAAACACTTTAGCAAGACGACAGACGATCTCCTTTTAGAATCTAAATACAGTGGATATAAAGCAACCCTCAAAACACAAGACACTTTCTAGATGAATACACGTTTGCTGAGAAAAAAGTAAACACGTGATTAGTCATGATAGCCTTCTTCATGCAACCTGGCCCTACTTTGCTTATGACATAATGTTGTGTTGAAAGACTTCCACTACAAGAATCCTACACAATCTGAGAACTTTTCTTGCTGTCTGTAATGGATTTTCTGGAGTATGATGACGCCATCGTTATTTTAATTACACCTGAAATGGCTTCACCCTCTTGTCAGGTAGAAGGATTCATTCCAAAATATTCAGTCTTCAGTGCTGAAGTGGAACTAGTGGAAGGAGCGAGTCAAATAAATCAACCAGCTTCTACGAGTTTTAAGTTTCTCAGTGGTCCAGGTCCAGGCAGAGCGCTTGTTCTCCTCTTAATCAAAGCAACAGATGCGATTAGTCTGGAGCGGGTGGCGCAGGCGGCTCTACCCCTGGGTAATCAATTTGCAATGGCAGATGCTCACGGGGGGAAACTCGCCTGCTGCCCAACAGCTGTTCTCCAGAAAGTATCAACCATCCCTTTATTGACTCTCCTCTCATCTTGCTTTGAACTGGAGGCAGTAGCATGTTCTTCTTTTTGTAGATGGACATCAGAATATCTAAATCATTTGATTAATCAAATAGCTGCACAGAAGGATGCATTGTATATTTAGTCAGTcttaattaaaaactgtttacaGTCTGACAGTTAATTAAAAGCTATTGTTTAGTGAAATTGACATGTCGGCTTTCTCTTAGCCCCATCTTAACCTGTTACTGAGATACTGACCAGtcactgtaaaacatgctgggattcacacaattgcttcatgttgtccttttttatttttatttttttacaaatttaagtgttttttaattgaccataaaacaattaagttgtttaaaacaattaagttcaactaattttaaataattccTTTAAAAAATACTGTCAAAACTACATTGTTGCTGATAAGGGTGCACAAGATAAGgcaattctttttgtttttattaaactaaaacTC
>TCONS_00049842
AACCTCGTTCATCTTCGTTTGAACAAAAAACACACGGAAACTCGCCTGTTTAGATCACCGAGAGACAAAAGTGTCTAGAATTGATGAACCGCATCAGAAGATTACAATTCTTACAGTGAATACCAGCAAGAATCGTTAAATCTCCACAAAATAGCACGCATAGCAAACAAAGCAGTTTACAAAACACGTCGGCGTTTCCCGACCAACGCACAGAAAAGCGGAGAAAACGCCTCTGCCACTGTTGAAGACTGGACTGAAACACTTTAGCAAGACGACAGACGATCTCCTTTTAGAATCTAAATACAGTGGATATAAAGCAACCCTCAAAACACAAGACACTTTCTAGATGAATACACGTTTGCTGAGAAAAAAGTAAACACGTGATTAGTCATGATAGCCTTCTTCATGCAACCTGGCCCTACTTTGCTTATGACATAATGTTGTGTTGAAAGACTTCCACTACAAGAATCCTACACAATCTGAGAACTTTTCTTGCTGTCTGTAATGGATTTTCTGGAGTATGATGACGCCATCGTTATTTTAATTACACCTGAAATGGCTTCACCCTCTTGTCAGGTAGAAGATGAACCCTCGTTAAGAGAGCGTCTGAGTGCTTCATCTCTGGATTCCCCATCCCACTGGAGGGCCTCCGTCTGGGCTGGTGCAGCTTCAGAGAAAACCTTTGGATTGATGTTGTCCGACAGAAGGGTCAAACCGACAGCCTGAAGCCCATGTTGGATATTAATAGTTTTGACCCAAACAAGCAAACAAGACAAGTTTCGTCAGTATTGATGGCAGACTACATAGCTCACTCTCTCTCCATCTCGGTATTCAAGGGCACGCTCAATGTTGTTCTGAGAGTTTTTGCAGATGAACTTTGTTTATTGGTTAGTCTCAGATCTCTCATGTAGAGGATGATGTCCATGTTTTCAACACGCTGACTGGGCGTCTATTGATTGTGGCGTTCACACCTCTAAAGGAGCATTTAACCTTTCTGGTTAACCTCTCTATGTGCTGATTTTCTTAATGTCTTTGATTACATCTTTTGCTGAGGAAAGATTCAGTGACTTGAATACATACAGCCTTGACACGTGGCAAAATCAGGACTATTTCATTGGCAGCGTAACACAATTTGTACAACAGATCTAaagttttcatttggtttattttcAACAATAAACCTGACTACACTTTGGGAACACc
>TCONS_00049843
CGGAAACTCGCCTGTTTAGATCACCGAGAGACAAAAGTGTCTAGAATTGATGAACCGCATCAGAAGATTACAATTCTTACAGTGAATACCAGCAAGAATCGTTAAATCTCCACAAAATAGCACGCATAGCAAACAAAGCAGTTTACAAAACACGTCGGCGTTTCCCGACCAACGCACAGAAAAGCGGAGAAAACGCCTCTGCCACTGTTGAAGACTGGACTGAAACACTTTAGCAAGACGACAGACGATCTCCTTTTAGAATCTAAATACAGTGGATATAAAGCAACCCTCAAAACACAAGACACTTTCTAGATGAATACACGTTTGCTGAGAAAAAAGTAAACACGTGATTAGTCATGATAGCCTTCTTCATGCAACCTGGCCCTACTTTGCTTATGACATAATGTTGTGTTGAAAGACTTCCACTACAAGAATCCTACACAATCTGAGAACTTTTCTTGCTGTCTGTAATGGATTTTCTGGAGTATGATGACGCCATCGTTATTTTAATTACACCTGAAATGGCTTCACCCTCTTGTCAGGTAGAAGcttGTATCTGAGATTGGAAAGAAGCTTCCATATTGTGGGTCTAAACACTATTCTTGGCCTCAATTAAACCTGCATGTCAGCCTCTTCTAACAGGATTCATTCCAAAATATTCAGTCTTCAGTGCTGAAGTGGAACTAGTGGAAGGAGCGAGTCAAATAAATCAACCAGCTTCTACG

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-091204-181 No description available

Ensembl:

ensembl_id ENSDARG00000093192

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049840 False 1100 processed_transcript 0.42 2 18936006 18967445
TCONS_00049841 False 1387 mRNA 0.39 3 18936009 18967653
TCONS_00049842 False 1203 processed_transcript 0.42 2 18936046 18939700
TCONS_00049843 True 725 processed_transcript 0.41 3 18936080 18941714

Neighbor

gene id symbol gene type direction distance location
XLOC_025232 tmem104 coding upstream 12091 18840810 ~ 18923915 (+)
XLOC_025235 CU151886.1 coding upstream 18423 18917461 ~ 18917583 (+)
XLOC_025234 CU151886.2 coding upstream 43240 18892650 ~ 18892766 (+)
XLOC_025233 AL772362.1 coding upstream 68054 18867835 ~ 18867952 (+)
XLOC_025231 tnpo2 coding upstream 96477 18807006 ~ 18839529 (+)
XLOC_025237 rln3a coding downstream 239523 19207176 ~ 19210637 (+)
XLOC_025238 il12rb2l coding downstream 248914 19216567 ~ 19238394 (+)
XLOC_025239 smarca4a coding downstream 278151 19245804 ~ 19282525 (+)
XLOC_025240 ldlra coding downstream 331656 19299309 ~ 19323689 (+)
XLOC_025241 BX322663.3 coding downstream 345338 19312991 ~ 19313107 (+)
XLOC_025429 BX649540.1 misc downstream 11281086 30248739 ~ 30249036 (+)
XLOC_025229 AL772362.2 non-coding upstream 147521 18771528 ~ 18788485 (+)
XLOC_025227 NA non-coding upstream 263715 18670824 ~ 18672291 (+)
XLOC_025243 BX322663.1 non-coding downstream 382066 19349719 ~ 19349817 (+)
XLOC_025248 NA non-coding downstream 505310 19472963 ~ 19473197 (+)
XLOC_025257 NA non-coding downstream 1092025 20059678 ~ 20064732 (+)
XLOC_025259 NA non-coding downstream 1230649 20198302 ~ 20198619 (+)

Expression


Co-expression Network