G585581


Basic Information

Item Value
gene id G585581
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 21958996 ~ 21959254 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU667956
GCTAGAAAGACAGTACATGTTCAAGTTTTGCCATAGAATTTGCaatgccaatttaagtcaaactgtaactaggccactcagaaacattcaatgtcatcttggtaagcaactccagtgtatatttggccttgtgttttaggttattgtcctgctgaaagatgaattaatctcccagtgtctgttggaaagaagactgaaccaggttatctctagaattttgcctgtgcttagctctattccctTTATTTTTATACTAAAA

Function

NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU667956 True 259 lncRNA 0.37 1 21958996 21959254

Neighbor

gene id symbol gene type direction distance location
sts sts coding upstream 132971 21812987 ~ 21826025 (+)
LOC110527503 LOC106575196 coding upstream 168817 21762128 ~ 21790179 (+)
LOC100136615 LOC100136615 coding upstream 207471 21749340 ~ 21799872 (+)
LOC110527502 LOC106575193 coding upstream 214996 21737749 ~ 21744000 (+)
LOC110527501 ralbb coding upstream 263802 21689336 ~ 21695194 (+)
LOC110527508 LOC106574269 coding downstream 331261 22290515 ~ 22312038 (+)
mxra5a LOC106574270 coding downstream 368317 22327571 ~ 22347037 (+)
c7h10orf53 cssa17h10orf53 coding downstream 397246 22356500 ~ 22360232 (+)
LOC118936317 LOC106574274 coding downstream 426616 22385870 ~ 22416150 (+)
LOC110527515 LOC106575209 coding downstream 501056 22460310 ~ 22470522 (+)
G585577 NA non-coding upstream 2629 21956149 ~ 21956367 (+)
G585558 NA non-coding upstream 16825 21941931 ~ 21942171 (+)
G585555 NA non-coding upstream 18199 21940588 ~ 21940797 (+)
G585529 NA non-coding upstream 32063 21924079 ~ 21926933 (+)
G585527 NA non-coding upstream 47116 21911601 ~ 21911880 (+)
G585600 NA non-coding downstream 9600 21968854 ~ 21969061 (+)
G585614 NA non-coding downstream 22142 21981396 ~ 21981719 (+)
G585624 NA non-coding downstream 30152 21989406 ~ 21989608 (+)
G585633 NA non-coding downstream 35634 21994888 ~ 21995290 (+)
G585757 NA non-coding downstream 118788 22078042 ~ 22078247 (+)
G585573 NA other upstream 5727 21953029 ~ 21953269 (+)
G584643 NA other upstream 876381 21080828 ~ 21082615 (+)
G583605 NA other upstream 1719199 20238911 ~ 20239797 (+)
LOC110528807 LOC106574429 other upstream 1937269 20017855 ~ 20028775 (+)
G581976 LOC106581475 other upstream 2981997 18976678 ~ 18976999 (+)
LOC110527523 stat1-2 other downstream 727235 22684527 ~ 22722539 (+)
G586685 NA other downstream 1050807 23010061 ~ 23015120 (+)
LOC110527540 LOC106533352 other downstream 1652098 23609520 ~ 23621369 (+)
G587660 NA other downstream 1848468 23807722 ~ 23808000 (+)

Expression


Co-expression Network