Gene
RNA
| Item | Value |
|---|---|
| gene id | G585855 |
| gene name | hdd1a |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048571.1 |
| NCBI id | CM023225.2 |
| chromosome length | 90918291 |
| location | 22227672 ~ 22230841 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| pseudouridine-5'-phosphatase-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU668239 | False | 549 | lncRNA | 0.45 | 2 | 22227672 | 22230059 |
| TU668240 | True | 501 | lncRNA | 0.40 | 2 | 22229724 | 22230841 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| sts | sts | coding | upstream | 401647 | 21812987 ~ 21826025 (+) |
| LOC110527503 | LOC106575196 | coding | upstream | 437493 | 21762128 ~ 21790179 (+) |
| LOC100136615 | LOC100136615 | coding | upstream | 476147 | 21749340 ~ 21799872 (+) |
| LOC110527502 | LOC106575193 | coding | upstream | 483672 | 21737749 ~ 21744000 (+) |
| LOC110527501 | ralbb | coding | upstream | 532478 | 21689336 ~ 21695194 (+) |
| LOC110527508 | LOC106574269 | coding | downstream | 59674 | 22290515 ~ 22312038 (+) |
| mxra5a | LOC106574270 | coding | downstream | 96730 | 22327571 ~ 22347037 (+) |
| c7h10orf53 | cssa17h10orf53 | coding | downstream | 125659 | 22356500 ~ 22360232 (+) |
| LOC118936317 | LOC106574274 | coding | downstream | 155029 | 22385870 ~ 22416150 (+) |
| LOC110527515 | LOC106575209 | coding | downstream | 229469 | 22460310 ~ 22470522 (+) |
| G585818 | NA | non-coding | upstream | 41528 | 22162860 ~ 22186144 (+) |
| G585757 | NA | non-coding | upstream | 149425 | 22078042 ~ 22078247 (+) |
| G585633 | NA | non-coding | upstream | 232382 | 21994888 ~ 21995290 (+) |
| G585624 | NA | non-coding | upstream | 238064 | 21989406 ~ 21989608 (+) |
| G585614 | NA | non-coding | upstream | 245953 | 21981396 ~ 21981719 (+) |
| G586031 | NA | non-coding | downstream | 58206 | 22289047 ~ 22289335 (+) |
| G586043 | NA | non-coding | downstream | 84639 | 22315480 ~ 22315719 (+) |
| G586044 | NA | non-coding | downstream | 84902 | 22315743 ~ 22316002 (+) |
| G586045 | NA | non-coding | downstream | 85304 | 22316145 ~ 22316373 (+) |
| G585573 | NA | other | upstream | 274403 | 21953029 ~ 21953269 (+) |
| G584643 | NA | other | upstream | 1145057 | 21080828 ~ 21082615 (+) |
| G583605 | NA | other | upstream | 1987875 | 20238911 ~ 20239797 (+) |
| LOC110528807 | LOC106574429 | other | upstream | 2205945 | 20017855 ~ 20028775 (+) |
| G581976 | LOC106581475 | other | upstream | 3250673 | 18976678 ~ 18976999 (+) |
| LOC110527523 | stat1-2 | other | downstream | 455648 | 22684527 ~ 22722539 (+) |
| G586685 | NA | other | downstream | 779220 | 23010061 ~ 23015120 (+) |
| LOC110527540 | LOC106533352 | other | downstream | 1380511 | 23609520 ~ 23621369 (+) |
| G587660 | NA | other | downstream | 1576881 | 23807722 ~ 23808000 (+) |
