XLOC_025239 (smarca4a)


Basic Information

Item Value
gene id XLOC_025239
gene name smarca4a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 19245804 ~ 19282525 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049846
GAGCAGACGGGAGGGGGAAGTGAGAGGGAAAAGGAACTCGCTGAAGCTGCCCTTTGTTTCTAGATTTGCCGAAGAGAACGGGGAAGAGACCGGCGCCGATATACACTGCTTTCTGAGAATCCAGAACACTGTGTTTCTGCCTCTCACTTCTGGCTCTGCTGAGAGATGTCCACTCCTGACCCACCCATGGGCGGGACCCCTCGGCCGGGACCTTCCCCAGGCCCTGGGCCGTCTCCTGGGGCCATGTTAGGGCCTAGTCCTGGACCCTCACCTGGCTCTGCCCATGGCATGATGGGCCCCAGCCCTGGGCCCCCCTCTTCGGGACACCCTCTACCTCCACAGGGCCCCTCAGGTTACCCGCAGGACAACATGCACCAGATGCACAAGCCCATGGAGGGCATGCATGAGAAAGGCATTCCTGAAGACCAGCGCTATGGTCAGATGAAAGGAATGGGCATGAGGCAGGGTGGGCACAGCGGTATGGGACCCCCACCCAGCCCTATGGACCAACATTCTCAAGGTTACCCATCTCCTCTGGGTGGTTCGGATCACGCCCCCAGCCCGGTACCTGCTAATGGCCCACCATCTGGCCCCATGATGCCCTCTGGTCCTGGTGCTATGCCTATGGAAGGCGGAGACCCGCAGGCAATGGCTCAACAGAACCGGAGTGGAGGTGCAGGTGGTGTTGCAGGGCCAGGACCCAGCGGAGGACCTCCAAACGCAGGTGGCCCTGGTGGTGCTGGCGGACCCACTCCTTTCAACCAAAACCAACTTCATCAGCTGCGGGCACAGATCATGGCCTATAAAATGCTTGCTCGCGGGCAGCCTTTACCAGATCACCTACAGATGGCAGTGCAGGGAAAGCGACCCATGCCCGGCATGCAGCAGGGGATGCCCAACATGCCCCCTGCTTCAGGACAAGGAGCAGGACCTCCTGGACCTGGGGTTCCCGGTCCTGGTGGACCCAACTACAATAGACCACATGGAATGGTTGGACCAAACATGCCTCCTCCAGGACCCTCTGGTGTACCTCCAGGCCTGCAAGGACAACCCACCAATGGACCACCTAAACCTTGGCCTGAAGGACCCATGGTGAACGCTGCTGCCCCCGCAAGTGCCCCACAGAAGCTGATACCCCCTCAGCCCACAGGCCGCCCTTCTCCAGCACCACCGTCAGTTCCTCCCGCTGCCTCCCCTGTCATGCCCCCTCAGACCCAGTCTCCAGGTCAGCCAGCCCAGCCACCGATGGTGCTGCACCAGAAACAGAACCGCATCACACCCATCCAGAAACCCCGGGGTCTAGACCCGGTGGAGATCCTCCAGGAAAGAGAGTACAGGTTACAGGCACGTATTGCGCATCGTATTCAGGAACTGGAGAATCTTCCAGGCTCTCTGGCTGGAGACTTGAGGACCAAAGCCAACATTGAGCTCAAGGCACTTAGACTTCTGAACTTTCAGAGACAGCTCCGTCAGGAAGTGGTAGTGTGTATGCGGCGTGATACGGCCCTGGAGACTGCACTCAACGCCAAGGCCTACAAGCGAAGTAAGAGACAGTCCCTGCGCGAGGCTCGTATCACTGAGAAACTGGAGAAACAGCAGAAGATCGAGCAGGAACGCAAACGCAGACAGAAACACCAGGAGTATCTCAACAGTATCCTGCAGCATGCAAAGGACTTCAAGGAATATCATCGTTCCATCACCGCAAAGATGCAGAAGTTGACCAAAGCCGTAGCCACGTACCACGCCAACACTGAGCGAGAGCAGAAGAAGGAGAATGAGCGTATCGAGAAGGAGAGAATGAGAAGGCTTATGGCTGAAGATGAAGAGGGTTACAGGAAGCTGATCGATCAAAAGAAGGACAAACGTTTGGCGTACCTGCTGCAGCAGACCGATGAGTATGTGGCCAATCTCACAGAGCTTGTCAGAGCTCACAAAGCAGCTCAGGCCCTCAaagacaagaagaagaagaagaaaaagaagAAGCCAGAGAACGCTGAAGGTGGAGCTCCTGCGCTTGGTCCTGATGGAGAGCCTCTGGATGAGACTAGTCAAATGAGTGACCTGCCGGTGAAGGTGATTCACGTGGACAGTGGGAAGATCCTCACTGGCATGGACGCTCCTAAAGCTGGACAACTGGATACTTGGCTGGAGATGAATCCAGGgTACGAGGTGGCCCCGCGCTCAGACAGTGAAGATAGTGGCTCAGATGAGGAAGAGGATGATGAGGAAGAGCCTCAGCCCTCTCAGGCCCCGACAGAGGAGAAGAAGGTGATTCCTGATCCAGACAGCGAGGATGTTTCTGAGGTTGATGCTCGTCACATTATTGAACATGCCAAGCAAGATGTAGACGATGAATACGGGAACTCTGCATTCATTCGGGGCCTGCAGTCATATTATGCTGTGGCCCACGCCGTCACAGAGAAGGTGGAAAAGCAATCGAGTCTGCTAGTGAACGGGCAGCTCAAACAATATCAGATTAAAGGTCTGGAGTGGCTGGTGTCTCTGTATAACAATAACCTAAATGGCATTCTGGCTGATGAAATGGGTTTGGGCAAAACTATCCAGACCATCGCACTCATCACCTACCTCATGGAGTTCAAACGCCTCAACGGACCCTTCCTTATCATCGTCCCCCTCTCGACTCTGTCGAACTGGGTGTACGAGTTTGATAAGTGGGCTCCATCTGTGGTGAAAGTTTCTTACAAGGGCTCTCCTGCTGCTCGCCGTGCGTTCCTTCCCATTTTGCGCAGTGGCAAATTCAACGTACTGGTCACTACTTATGAATACATCATCAAAGATAAGCAAGTGCTGGCCAAGCTCCGTTGGAAGTACATGATCGTGGATGAAGGTCACCGCATGAAAAATCACCACTGTAAACTGACTCAGGTATTAAATACGCACTACCTGGCACCCCGGCGTGTGCTGCTAACTGGCACTCCACTGCAAAACAAGCTGCCCGAGCTGTGGGCGCTGCTCAACTTCCTGCTGCCCACCATCTTCAAGAGCTGCAGCACCTTTGAGCAGTGGTTCAACGCGCCCTTCGCCATGACTGGAGAGAAGGTGGACCTAAATGAAGAAGAAACCATCCTGATCATCCGTCGTCTGCACAAAGTGCTTCGGCCCTTCCTGCTCAGGAGACTTAAGAAGGAAGTAGAGGCGCAGCTACCAGAGAAGGTGGAATATGTGATCAAGTGCGACATGTCGGCTCTTCAAAGAGTGCTGTACAGGCACATGCAGGCTAAAGGAGTGCTGCTCACTGACGGCTCTGAGAAAGACAAGAAGGGCAAAGGGGGCACTAAGACACTGATGAACACTATTATGCAGCTGAGGAAGATCTGTAACCACCCGTACATGTTTCAGCACATTGAgGAATCTTTCTCTGAGCACCTGGGCTTCACTGGAGGCATCGTTCAGGGGTCTGATTTGTACCGTGCCTCTGGTAAATTTGAGCTGCTGGACCGCATTCTGCCAAAGCTCCGCGCCACCAACCACAAAGTGCTGCTCTTTTGTCAGATGACCACACTCATGACCATCATGGAGGACTACTTTGCTTACCGCAACTTCAAATACCTCCGCTTAGACGGAACCACTAAGGCTGAGGATCGTGGCATGTTGCTGAAGAACTTTAACGATCCTTCCCATCAGTACTTCATTTTCCTGCTGAGCACCAGAGCAGGGGGTTTGGGGCTGAACCTGCAGTCTGCCGACACTGTCATCATCTTTGACAGCGACTGGAACCCTCACCAGGATCTACAGGCTCAGGATCGAGCCCATCGCATCGGGCAGCAGAATGAGGTGCGTGTGCTGCGTCTGTGCACTGTGAACAGTGTGGAAGAAAAGATCTTGGCTGCTGCCAAATACAAACTCAATGTGGACCAGAAGGTCATCCAAGCCGGTATGTTCGACCAGAAGTCCTCCAGCCACGAGCGCAGAGCTTTCCTGCAGGCCATCCTGGAGCACGAAGAGCAGGATGAGGAGGAAGATGAAGTACCTGATGATGAAACTGTTAATCAGATGATCGCCAGAAGCGAGGAAGAGTTCGACCACTTTATGCGCATGGATCTGGACAGGCGACGTGAGGAGGCTCGTAACCCGAAGCGCAGGCCGAGGCTGATGGAGGAAGATGAGCTGCCCACCTGGATCATGAAGGACGATGCTGAGGTGGAGAGGCTCACCTGTGAAGAGGAAGAGGAGAAGATGTTCGGCCGTGGCTCCCGCCAGAGGAAGGAGGTGGATTACAGTGACTCTCTGACAGAGAAACAGTGGCTGAAGGCCATCGAGGAAGGCACCCTGGATGAGATTGAGGAGGAAGTGCGCCACAAGAAAACAACCCGGAAGAGGAAACGTGACCGAGATCTTGACCTTCCCGGTCCGGCCACACCTAGCTCCAGTGGGCGGAGCAGAGATAAAGATGACGACGGTAAGAAGCAGAAGAAACGCGGCCGCCCTCCTGCTGAGAAACTCTCACCCAATCCTCCATCACTAACCAAGAAGATGAAGAAGACTGTGGACGCAGTGATCAAATACAAGGATGGCAATGGGAGGCAACTGAGCGAGGTGTTCATTCAACTGCCGTCTCGTAAAGAGCTGCCCGAGTATTATGAACTTATCCGCAAACCTGTGGACTTCAGGAAGATCAAGGAGCGCATCAGGAGTCACAAGTACCGCAGTCTGAATGACCTAGAGAAGGACGTTATGCTGCTGTGTCAGAACGCTCAGACCTTCAACCTGGAGGGATCTTTGATCTACGAGGACTCTATCGTGCTGCAGTCTGTGTTCACCAGCGTGCGGCAGAAGATCGAGAAAGAGGAGGAAGAGAGTGAGGGAGATGACAGCGAGGAGGAAGAGGATGATGTCGATGAAGGATCCGAGTCTGAATCTCGTTCAGTGAAGGTGAAGATAAAGTTGAGTAGAAAGGACAAGGCGGAGAGAGGAAAAGGACGACGCCGAACCGGACGCAGCTCGCGGCCTAAACCTGTTGTTAGTGATGACGACAGTGAGGAAGACCAGGAAGAGGAGCATTCGGCTAGTGGCAGCGAGGAAGATTAAAAACCTCCTTCGAGATGCCTCAGGACCAATCCCGTCTCTCTGCTGCAAAAACGTCATTTTACTTCAGATTCAGCACGCCTGCATTTCAGGGGCCTAGTTTTATCCTAGAACAGCACATTTTTAGAGACATGACAAGTATACGAAACGATTAAATGAGAAAATGACACTATATAAAATGCAGAGAGAAAAATGGCCCCTTCCATTTGCATATTTAAGCAGACGAAATCTTTATGTATAGCAGGACAGTTTAAGCGTTGAGCATTTGGTGTTACTTTCCACGtttgtttttatgatttttgATTTCTCAAGGATGTGACATAAGATGGACAGATATCTGACAGACCAGACTCAGTGGACCAGTAAGAATGGATCATGTTTCATTGTCCTCTTATTGTTTTTAGCTGTGTGAACGTCACCCCCTTTATCCCCCTACACACCCCAGAATGCATGCTATTTGTGGTAAACGCAGCCAGTTATTTCTCTTTCCGTTTTTCCTCTGTTTAAATTTAGATTGCAAACAGGATTAAGGTACTTCTAGTCAGGAGGAATGGGGGAGAATAGGGTGTAGGATTCTGTACTGTGTCAGTGTCACTGGATTTACAAAATGCACAATAAAGGCATCTCAGAATTA
>TCONS_00049847
GCTTTCTGAGAATCCAGAACACTGTGTTTCTGCCTCTCACTTCTGGCTCTGCTGAGAGATGTCCACTCCTGACCCACCCATGGGCGGGACCCCTCGGCCGGGACCTTCCCCAGGCCCTGGGCCGTCTCCTGGGGCCATGTTAGGGCCTAGTCCTGGACCCTCACCTGGCTCTGCCCATGGCATGATGGGCCCCAGCCCTGGGCCCCCCTCTTCGGGACACCCTCTACCTCCACAGGGCCCCTCAGGTTACCCGCAGGACAACATGCACCAGATGCACAAGCCCATGGAGGGCATGCATGAGAAAGGCATTCCTGAAGACCAGCGCTATGGTCAGATGAAAGGAATGGGCATGAGGCAGGGTGGGCACAGCGGTATGGGACCCCCACCCAGCCCTATGGACCAACATTCTCAAGGTTACCCATCTCCTCTGGGTGGTTCGGATCACGCCCCCAGCCCGGTACCTGCTAATGGCCCACCATCTGGCCCCATGATGCCCTCTGGTCCTGGTGCTATGCCTATGGAAGGCGGAGACCCGCAGGCAATGGCTCAACAGAACCGGAGTGGAGGTGCAGGTGGTGTTGCAGGGCCAGGACCCAGCGGAGGACCTCCAAACGCAGGTGGCCCTGGTGGTGCTGGCGGACCCACTCCTTTCAACCAAAACCAACTTCATCAGCTGCGGGCACAGATCATGGCCTATAAAATGCTTGCTCGCGGGCAGCCTTTACCAGATCACCTACAGATGGCAGTGCAGGGAAAGCGACCCATGCCCGGCATGCAGCAGGGGATGCCCAACATGCCCCCTGCTTCAGGACAAGGAGCAGGACCTCCTGGACCTGGGGTTCCCGGTCCTGGTGGACCCAACTACAATAGACCACATGGAATGGTTGGACCAAACATGCCTCCTCCAGGACCCTCTGGTGTACCTCCAGGCCTGCAAGGACAACCCACCAATGGACCACCTAAACCTTGGCCTGAAGGACCCATGGTGAACGCTGCTGCCCCCGCAAGTGCCCCACAGAAGCTGATACCCCCTCAGCCCACAGGCCGCCCTTCTCCAGCACCACCGTCAGTTCCTCCCGCTGCCTCCCCTGTCATGCCCCCTCAGACCCAGTCTCCAGGTCAGCCAGCCCAGCCACCGATGGTGCTGCACCAGAAACAGAACCGCATCACACCCATCCAGAAACCCCGGGGTCTAGACCCGGTGGAGATCCTCCAGGAAAGAGAGTACAGGTTACAGGCACGTATTGCGCATCGTATTCAGGAACTGGAGAATCTTCCAGGCTCTCTGGCTGGAGACTTGAGGACCAAAGCCAACATTGAGCTCAAGGCACTTAGACTTCTGAACTTTCAGAGACAGCTCCGTCAGGAAGTGGTAGTGTGTATGCGGCGTGATACGGCCCTGGAGACTGCACTCAACGCCAAGGCCTACAAGCGAAGTAAGAGACAGTCCCTGCGCGAGGCTCGTATCACTGAGAAACTGGAGAAACAGCAGAAGATCGAGCAGGAACGCAAACGCAGACAGAAACACCAGGAGTATCTCAACAGTATCCTGCAGCATGCAAAGGACTTCAAGGAATATCATCGTTCCATCACCGCAAAGATGCAGAAGTTGACCAAAGCCGTAGCCACGTACCACGCCAACACTGAGCGAGAGCAGAAGAAGGAGAATGAGCGTATCGAGAAGGAGAGAATGAGAAGGCTTATGGCTGAAGATGAAGAGGGTTACAGGAAGCTGATCGATCAAAAGAAGGACAAACGTTTGGCGTACCTGCTGCAGCAGACCGATGAGTATGTGGCCAATCTCACAGAGCTTGTCAGAGCTCACAAAGCAGCTCAGGCCCTCAaagacaagaagaagaagaagaaaaagaagAAGCCAGAGAACGCTGAAGGTGGAGCTCCTGCGCTTGGTCCTGATGGAGAGCCTCTGGATGAGACTAGTCAAATGAGTGACCTGCCGGTGAAGGTGATTCACGTGGACAGTGGGAAGATCCTCACTGGCATGGACGCTCCTAAAGCTGGACAACTGGATACTTGGCTGGAGATGAATCCAGGgTACGAGGTGGCCCCGCGCTCAGACAGTGAAGATAGTGGCTCAGATGAGGAAGAGGATGATGAGGAAGAGCCTCAGCCCTCTCAGGCCCCGACAGAGGAGAAGAAGGTGATTCCTGATCCAGACAGCGAGGATGTTTCTGAGGTTGATGCTCGTCACATTATTGAACATGCCAAGCAAGATGTAGACGATGAATACGGGAACTCTGCATTCATTCGGGGCCTGCAGTCATATTATGCTGTGGCCCACGCCGTCACAGAGAAGGTGGAAAAGCAATCGAGTCTGCTAGTGAACGGGCAGCTCAAACAATATCAGATTAAAGGTCTGGAGTGGCTGGTGTCTCTGTATAACAATAACCTAAATGGCATTCTGGCTGATGAAATGGGTTTGGGCAAAACTATCCAGACCATCGCACTCATCACCTACCTCATGGAGTTCAAACGCCTCAACGGACCCTTCCTTATCATCGTCCCCCTCTCGACTCTGTCGAACTGGGTGTACGAGTTTGATAAGTGGGCTCCATCTGTGGTGAAAGTTTCTTACAAGGGCTCTCCTGCTGCTCGCCGTGCGTTCCTTCCCATTTTGCGCAGTGGCAAATTCAACGTACTGGTCACTACTTATGAATACATCATCAAAGATAAGCAAGTGCTGGCCAAGCTCCGTTGGAAGTACATGATCGTGGATGAAGGTCACCGCATGAAAAATCACCACTGTAAACTGACTCAGGTATTAAATACGCACTACCTGGCACCCCGGCGTGTGCTGCTAACTGGCACTCCACTGCAAAACAAGCTGCCCGAGCTGTGGGCGCTGCTCAACTTCCTGCTGCCCACCATCTTCAAGAGCTGCAGCACCTTTGAGCAGTGGTTCAACGCGCCCTTCGCCATGACTGGAGAGAAGGTGGACCTAAATGAAGAAGAAACCATCCTGATCATCCGTCGTCTGCACAAAGTGCTTCGGCCCTTCCTGCTCAGGAGACTTAAGAAGGAAGTAGAGGCGCAGCTACCAGAGAAGGTGGAATATGTGATCAAGTGCGACATGTCGGCTCTTCAAAGAGTGCTGTACAGGCACATGCAGGCTAAAGGAGTGCTGCTCACTGACGGCTCTGAGAAAGACAAGAAGGGCAAAGGGGGCACTAAGACACTGATGAACACTATTATGCAGCTGAGGAAGATCTGTAACCACCCGTACATGTTTCAGCACATTGAgGAATCTTTCTCTGAGCACCTGGGCTTCACTGGAGGCATCGTTCAGGGGTCTGATTTGTACCGTGCCTCTGGTAAATTTGAGCTGCTGGACCGCATTCTGCCAAAGCTCCGCGCCACCAACCACAAAGTGCTGCTCTTTTGTCAGATGACCACACTCATGACCATCATGGAGGACTACTTTGCTTACCGCAACTTCAAATACCTCCGCTTAGACGGAACCACTAAGGCTGAGGATCGTGGCATGTTGCTGAAGAACTTTAACGATCCTTCCCATCAGTACTTCATTTTCCTGCTGAGCACCAGAGCAGGGGGTTTGGGGCTGAACCTGCAGTCTGCCGACACTGTCATCATCTTTGACAGCGACTGGAACCCTCACCAGGATCTACAGGCTCAGGATCGAGCCCATCGCATCGGGCAGCAGAATGAGGTGCGTGTGCTGCGTCTGTGCACTGTGAACAGTGTGGAAGAAAAGATCTTGGCTGCTGCCAAATACAAACTCAATGTGGACCAGAAGGTCATCCAAGCCGGTATGTTCGACCAGAAGTCCTCCAGCCACGAGCGCAGAGCTTTCCTGCAGGCCATCCTGGAGCACGAAGAGCAGGATGAGGAGGAAGATGAAGTACCTGATGATGAAACTGTTAATCAGATGATCGCCAGAAGCGAGGAAGAGTTCGACCACTTTATGCGCATGGATCTGGACAGGCGACGTGAGGAGGCTCGTAACCCGAAGCGCAGGCCGAGGCTGATGGAGGAAGATGAGCTGCCCACCTGGATCATGAAGGACGATGCTGAGGTGGAGAGGCTCACCTGTGAAGAGGAAGAGGAGAAGATGTTCGGCCGTGGCTCCCGCCAGAGGAAGGAGGTGGATTACAGTGACTCTCTGACAGAGAAACAGTGGCTGAAGGCCATCGAGGAAGGCACCCTGGATGAGATTGAGGAGGAAGTGCGCCACAAGAAAACAACCCGGAAGAGGAAACGTGACCGAGATCTTGACCTTCCCGGTCCGGCCACACCTAGCTCCAGTGGGCGGAGCAGAGATAAAGATGACGACGGTAAGAAGCAGAAGAAACGCGGCCGCCCTCCTGCTGAGAAACTCTCACCCAATCCTCCATCACTAACCAAGAAGATGAAGAAGACTGTGGACGCAGTGATCAAATACAAGGATGGCAATGGGAGGCAACTGAGCGAGGTGTTCATTCAACTGCCGTCTCGTAAAGAGCTGCCCGAGTATTATGAACTTATCCGCAAACCTGTGGACTTCAGGAAGATCAAGGAGCGCATCAGGAGTCACAAGTACCGCAGTCTGAATGACCTAGAGAAGGACGTTATGCTGCTGTGTCAGAACGCTCAGACCTTCAACCTGGAGGGATCTTTGATCTACGAGGACTCTATCGTGCTGCAGTCTGTGTTCACCAGCGTGCGGCAGAAGATCGAGAAAGAGGAGGAAGAGAGTGAGGGAGATGACAGCGAGGAGGAAGAGGATGATGTCGATGAAGGATCCGAGTCTGAATCTCGTTCAGTGAAGGTGAAGATAAAGTTGAGTAGAAAGGACAAGGCGGAGAGAGGAAAAGGACGACGCCGAACCGGACGCAGCTCGCGGCCTAAACCTGTTGTTAGTGATGACGACAGTGAGGAAGACCAGGAAGAGGAGCATTCGGCTAGTGGCAGCGAGGAAGATTAAAAACCTCCTTCGAGATGCCTCAGGACCAATCCCGTCTCTCTGCTGCAAAAACGTCATTTTACTTCAGATTCAGCACGCCTGCATTTCAGGGGCCTAGTTTTATCCTAGAACAGCACATTTTTAGAGACATGACAAGTATACGAAACGATTAAATGAGAAAATGACACTATATAAAATGCAGAGAGAAAAATGGCCCCTTCCATTTGCATATTTAAGCAGACGAAATCTTTATGTATAGCAGGACAGTTTAAGCGTTGAGCATTTGGTGTTACTTTCCACGtttgtttttatgatttttgATTTCTCAAGGATGTGACATAAGATGGACAGATATCTGACAGACCAGACTCAGTGGACCAGTAAGAATGGATCATGTTTCATTGTCCTCTTATTGTTTTTAGCTGTGTGAACGTCACCCCCTTTATCCCCCTACACACCCCAGAATGCATGCTATTTGTGGTAAACGCAGCCAGTTATTTCTCTTTCCGTTTTTCCTCTGTTTAAATTTAGATTGCAAACAGGATTAAGGTACTTCTAGTCAGGAGGAATGGGGGAGAATAGGGTGTAGGATTCTGTACTGTGTCAGTGTCACTGGATTTACAAAATGCACAATAAAGGCATCTCAGAATTATTTCGGCTTCAGAGTTTCTGTTTTGACCGTGTTTTTGAAGTATATCAGAGTATTAAAGGCAGGGTGCGAGTTACAGGAGGGTTAGGGGGGTTCTGACCAAATTAATTAAGGCTTGATCCTCCCTAAAGGAAATCAAAACTGTttaaatagtttgctctgatctgtatcttaaataatgtcaataattgaaaatattaaaatgtaaatatactttTGACCACCCCATAATGGTTTTTTTTCGATGCATAATTTCGCCAATCAGTCTGTGCGAGAAgccattcaacagtctgaaactgcaGATCAAGAGGACCTAGAGACTTTATTTCCTGTAAAATAGGTTTGTATCTACATATAccttaaaagtaaagtaaaattagatgcagagtttgacctacagtaacctctaaaatagctaatcagaggtAGGTTAGgatacactaaatatccctcaaaacactaaCCACTTCAAAAGGTTTTATTGATATATTAGGTGTAATTGTAAATGCATACATTCTCATTGAAGCATGTATTACAGAAACCAACACAAACCTGCGGAAAAGGTTGACTCTCccgatcgtcaatgtataattcgcacttattaaagggatagttcagccaaaaatgaaaattctgtcatttatttatcc

Function

symbol description
smarca4a Predicted to enable ATPase, acting on DNA and DNA binding activity. Acts upstream of or within animal organ development; fin regeneration; and nervous system development. Predicted to be part of SWI/SNF complex. Predicted to be active in nucleus. Is expressed in head; mesoderm; nervous system; pectoral fin; and presumptive neural retina. Human ortholog(s) of this gene implicated in Coffin-Siris syndrome 4; hepatocellular carcinoma; lung non-small cell carcinoma; and rhabdoid cancer. Orthologous to human SMARCA4 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0003406 retinal pigment epithelium development biological_process
GO:0003407 neural retina development biological_process
GO:0043044 ATP-dependent chromatin remodeling biological_process
GO:0030182 neuron differentiation biological_process
GO:0021634 optic nerve formation biological_process
GO:0060973 cell migration involved in heart development biological_process
GO:0048596 embryonic camera-type eye morphogenesis biological_process
GO:0000185 activation of MAPKKK activity biological_process
GO:0031101 fin regeneration biological_process
GO:0014032 neural crest cell development biological_process
GO:0014033 neural crest cell differentiation biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0007417 central nervous system development biological_process
GO:0060038 cardiac muscle cell proliferation biological_process
GO:0010842 retina layer formation biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0001947 heart looping biological_process
GO:0060059 embryonic retina morphogenesis in camera-type eye biological_process
GO:0016514 SWI/SNF complex cellular_component
GO:0005634 nucleus cellular_component
GO:0042393 histone binding molecular_function
GO:0008134 transcription factor binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0016817 hydrolase activity, acting on acid anhydrides molecular_function
GO:0016887 ATPase activity molecular_function
GO:0008094 DNA-dependent ATPase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030605-1 Predicted to enable ATPase, acting on DNA and DNA binding activity. Acts upstream of or within animal organ development; fin regeneration; and nervous system development. Predicted to be part of SWI/SNF complex. Predicted to be active in nucleus. Is expressed in head; mesoderm; nervous system; pectoral fin; and presumptive neural retina. Human ortholog(s) of this gene implicated in Coffin-Siris syndrome 4; hepatocellular carcinoma; lung non-small cell carcinoma; and rhabdoid cancer. Orthologous to human SMARCA4 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4).

Ensembl:

ensembl_id ENSDARG00000077226

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049846 False 5680 mRNA 0.53 34 19245804 19281878
TCONS_00049847 True 6220 mRNA 0.51 33 19248973 19282525

Neighbor

gene id symbol gene type direction distance location
XLOC_025238 il12rb2l coding upstream 7410 19216567 ~ 19238394 (+)
XLOC_025237 rln3a coding upstream 35167 19207176 ~ 19210637 (+)
XLOC_025236 si:ch211-198m1.1 coding upstream 278151 18936006 ~ 18967653 (+)
XLOC_025235 CU151886.1 coding upstream 328221 18917461 ~ 18917583 (+)
XLOC_025234 CU151886.2 coding upstream 353038 18892650 ~ 18892766 (+)
XLOC_025240 ldlra coding downstream 16784 19299309 ~ 19323689 (+)
XLOC_025241 BX322663.3 coding downstream 30466 19312991 ~ 19313107 (+)
XLOC_025242 kri1 coding downstream 53761 19336286 ~ 19355200 (+)
XLOC_025243 BX322663.1 coding downstream 67194 19349719 ~ 19349817 (+)
XLOC_025244 spc24 coding downstream 73344 19355869 ~ 19363981 (+)
XLOC_025429 BX649540.1 misc downstream 10966214 30248739 ~ 30249036 (+)
XLOC_025233 AL772362.1 non-coding upstream 377852 18867835 ~ 18867952 (+)
XLOC_025229 AL772362.2 non-coding upstream 457319 18771528 ~ 18788485 (+)
XLOC_025227 NA non-coding upstream 573513 18670824 ~ 18672291 (+)
XLOC_025248 NA non-coding downstream 190438 19472963 ~ 19473197 (+)
XLOC_025257 NA non-coding downstream 777153 20059678 ~ 20064732 (+)
XLOC_025259 NA non-coding downstream 915777 20198302 ~ 20198619 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000034_04431146_04446849 SMARCA4A, SMARCA4 coding CI01000034 null 4431146 ~ 4447168 (-)