G586414 (LOC106574278)


Basic Information

Item Value
gene id G586414
gene name LOC106574278
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 22463208 ~ 22470518 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU668853
gacaaacatgttttatttttggtGATATAAACCCTTCACACCTAAGAACAAACGTCAGTTCATATTTGAGAGTTAAGAAAAAAAGCTGTGTACAAAAAACGCTTAAATTACACAAGATATCCTTTGAGAGGGAAAATGTCTGGCAATTGTAACGTCAATCATTCCACACACGACATACTATTTCTACGCAAAAAGGACCAAAgaagtgtggtatatggccaatataccatggcaaaGGAATGTTCATGCGTAtgacgcaacgtggagtgcctggacacagcccttagccgtggtatattggcaatatatcCCGAGGTGCCTTGtgtcaaaaccatttgatgtaGTGTTCAATTCAGAAAGGTCATTGAGCAGCTGCTTCATTCTTAAGCATTTGAATAAAATACAAGGTATGTGGCAGTAAGGCATACAATaagtattaaaaatacaaatcaaTAACACCTCAGTGATTGGAATGTAACACATGCGTGGATATAACGTAGCTCTGGTTGATGGTGCGTGTTCCGCTAATGTAACATGTGAGGAACGTCCTGGACCAGAGTTCGGTATTACTACGCATGGAATCCATCCAGAAACCCATGAGTCTACAATAATAATGCATAGAATAAATATCAAGCTATATAATACACACTAGTGGTGAACAGCATATTTTTTAAAAGACatgcaaatatatatattctactaTCTGCAGAATTAAAGTTGAACAAGTTCAAGTCAAGTTTCCACACATTATCTGATATCCCATTTAAAAGTGAACACTCAAGACAACCCGGTAACACAACTAATTCCGAGATTGGACAATTAAATACATCTTGAATGTCAATGTACTGTTGACCATCAAACAAATTGTATTTCTGTTTGGTGTGAAGTACAGTATTTTCAATGATAACCCTAACCAGACCTTGATCATTTGGCGCCCTCTAGCTGTAGAAGTGAAAAGTAAAGTAATACAAAAGGGTTACCAGTATTAAATAGAATTATCAATAGTCTGGCTGGAATTTAACTAACATTTGTGATTTGACTAATAAGCCAAAACAATGACGACTATCGGTGAATGTActccattttgtatttatttctctTCTGTCTGATGGGAGGGGGGTCTTTGTCCATTTTATTTCTTCACATGAACCCAGAGTTTTTACGGTCTTTGTCCTTCTTGAGGTTGGCGTTAGTGTTGAAGGACTGGCCTTGGAGCAGCTCGGCAGCTGTTTTCTTCTTGCTGAAGGTGTTGATCTCGTCCTCCAGAGACCTTCTCTTCTCATCCAGCTTGCTCTTCTCCTCAGAGTGCAGTCTCTTCAGCTGCTCAAACTTACCTTGCAACTCTCTCTCAGCTTCCTTCAGCTCAGTCTCCTTCTCCTTGACTCTCTGGACAAACATCtgcctcatctcctcctctctccgctGCAAGTCTCCCAGGAACTCGTGACGCTTGGCTTCATAGGTCTCCTGCAGGCTGACTGGCTTGCTCTCCGGGTTTGTGTCCGTGAACCCCATCTCCTCCAGTTTACAGCGGCGGTAGAGCTCGTAGTGGCGCGTGTGGGTCTGCTCCCTCAGGTCCTCCATGTTCACACAGATCAGCATCTCCCTCAGCTTCACAAAGTCACAGTGGTTCTCGTTCTCCACTTGCACCACACCCCAGGGATACTGCCGAGCTTTGACCATTTTATTTCCAATCTTCACCTCCTCGGAGCTCCCCACAACAGCAAAAGGCAGGATACCATTCATGGCAGTGTTGATCTTGGAGACCGTCTCGTCGTCGGTAGGGAACTGGTAGATCTGGACACCGTTACTGACCAACTCGCTCATGATCTTGATCTTAAACTTGTGGAGCTCGCTCTTGGAGATGGTGTCTGCTTTGGCGATGACAGGAATGATGTTGAcCTTGCTGTCCAGTTTCTTCATAGTGACCAGGTCCAGGGACTTGAGAGAGTGTCCTGAAGGGGCGATGAAGTAGAGACAGGCATGGATACGGGAGTCGTGGTAGTTGTGGAGGGACCGCTTGATCTTCAACTCCTCCTGTAGATACGACTCGAACTGGGTGTCAATGTAGTCCACAACATGCTGGTAGctctcctgcTTGTTCATCTGGTCCCCAAAGCCCACTGTGTTGACGATGGTCAGCTTGAGTCGCACGTTGCTCTCCTGCAGGTCATAGGTCTGCGCTCGCAGCTTCACCTTGGGCTCGAAGTGAGACGACTCAAAGTTCTCAAAGTTAGTGTTGAACAGTGTGTCCATTAGGGTGGATTTGCCAATACCCGTTTCGCCAATACAGAGGATATTGAAGCAGAAACCTTGACATGTTGATTTGTTGACcagctggtgaggtaggctgtCGAAGCCAACATGGCCAGACAAGGACAGGGGCCGGGCATTTTTGTCCTGTTATAGGGAGACATAGCCTAACATTAGGCCAACTCAGTATATGACAATATCTGACAACAGCTTGGACTGGTTAACCTAGGTAAATAATCTTATATTCCTATGTTTTCATT
>TU668852
AACGGGATTttagggaaatcgttcttcttCCAAAGCATGTAAATGTTTTCATCACACTATCCACAATAATCGTGTTACTGTGTGCATGTATCCATGCTCACTGAGGTGCACTGTCTAGCACAGTCAAATTCACCACTGTGAGGTATGGAATTGGGCAGAGAGCCTGAAAGATGCCAAGGGAATGTTAGACAACTCACATTCATGGCAGTGTTGATCTTGGAGACCGTCTCGTCGTCGGTAGGGAACTGGTAGATCTGGACACCGTTACTGACCAACTCGCTCATGATCTTGATCTTAAACTTGTGGAGCTCGCTCTTGGAGATGGTGTCTGCTTTGGCGATGACAGGAATGATGTTGAcattgggctcccgagtggcgcagaggtctaaggcactgcatctcagtgctagaggcgtcaccacagaccctggtttgattccaggctgtatcacaaccggccgtgattggagtcccatagggcggtgcacaactggcccagcgtcgttagtgtttggc

Function

NR:

description
PREDICTED: septin-8-A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU668853 False 2513 TUCP 0.44 9 22463208 22470518
TU668852 True 516 lncRNA 0.50 2 22464771 22465441
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110527516 LOC106575207 coding downstream 4561 22456193 ~ 22460210 (-)
cd99 NA coding downstream 79782 22368653 ~ 22384989 (-)
LOC110512351 LOC106575201 coding downstream 96334 22362161 ~ 22368437 (-)
pudp hdd1a coding downstream 234029 22213623 ~ 22230742 (-)
LOC110527506 LOC106575199 coding downstream 300776 22089741 ~ 22163995 (-)
cep70 LOC106575208 coding upstream 5394 22470835 ~ 22478890 (-)
LOC110527519 LOC106575210 coding upstream 22444 22487885 ~ 22515173 (-)
fam207a cu070 coding upstream 97840 22563281 ~ 22587668 (-)
plcd4a LOC106575211 coding upstream 122405 22587846 ~ 22609469 (-)
LOC110527522 LOC106575212 coding upstream 144443 22609884 ~ 22620248 (-)
G586411 NA non-coding downstream 9947 22454261 ~ 22454824 (-)
G586405 NA non-coding downstream 18590 22445948 ~ 22446181 (-)
G586392 NA non-coding downstream 20248 22444286 ~ 22444523 (-)
G586322 NA non-coding downstream 148034 22316503 ~ 22316737 (-)
G586319 NA non-coding downstream 152274 22312278 ~ 22312497 (-)
G586398 NA non-coding upstream 20843 22486284 ~ 22543581 (-)
G586488 NA non-coding upstream 99041 22564482 ~ 22605033 (-)
G586522 NA non-coding upstream 155558 22620999 ~ 22624553 (-)
G586539 NA non-coding upstream 220124 22685565 ~ 22685824 (-)
G586541 NA non-coding upstream 222258 22687699 ~ 22703875 (-)
LOC110527499 LOC106575189 other downstream 945898 21513832 ~ 21583054 (-)
G585240 LOC106575179 other downstream 1040186 21421454 ~ 21424585 (-)
LOC110527470 LOC103366558 other downstream 1625435 20838415 ~ 20839399 (-)
otos2 LOC106575250 other downstream 1686706 20772867 ~ 20778065 (-)
LOC110527529 ngl1 other upstream 343212 22807676 ~ 22812906 (-)
G586878 NA other upstream 619049 23084490 ~ 23087137 (-)
LOC110527533 s100b other upstream 696453 23161894 ~ 23165209 (-)
G587242 NA other upstream 909571 23375012 ~ 23377701 (-)

Expression

G586414(LOC106574278) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 4.
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G586414(LOC106574278) Expression in each Bioproject

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G586414(LOC106574278) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 40.
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Co-expression Network