G586229 (LOC106575212)


Basic Information

Item Value
gene id G586229
gene name LOC106575212
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 22609961 ~ 22611689 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU668639
CTAAAGGGAGACACCGTACTCATCAAAGATGCAGTACACTCACACTTGGCACATCAGGTCAGTGTTTTTATAAATTATGAATAAGCCAGGTCAGAGGAGGAGAGTTTAAAGAGAAGAGGCATtactcaaatgttgttttttacctttatttaactaggcaagtcagttaagaacaaattcttatttacaatgacagcctaccagggaacagtgggttaactgccttgttcacgggcagaatgacagacttataccttgtcagctcagggattcgaccgagcaacctttcagttactggcccaaagctctaaccactaggctacctgctttgcCACTGACAGAGAACAAGGCTGTGTTGAGGCCGGAGTTACCTCTACAGTTTAGCACTGAGAACAACTTATTTTTTCTGACCGAGTCTCCACTCAGGTTCCAGAGCATCAATAATACACTGCAGCAGCTCAGGTTTCACATAGATAGACAGGGCCAAGGCTCAAATGGGGGGGGGGTCCCTTATCTGTTAACACTGAAGCACGCCAACACGTTTACCTTGCAGCAACCTCTGTAATATACACAACACAGGAGCAGCTTGATTTCAGTTGATTTTCATTCACTAGCCCATTTGAGATGTGCATATCTATAACACATGCATGTAACCACAAAGCAGTTACTTTGTAATATGTTATTACACAAGAGAAAGTATGTCACATAAACAGTATCGCATACGTCAAGGTGTAACATTTTACTCTGTCGTACACTTCAATCTCAGAACACTTAGTGAAGACTCCAAAATTTCCttgagaaaaaaatatagaaCTAATAGTTTGAGGACAAGTGAAAACGCATCCATATACTGCTGGAGATAGGGCAGACAGTTTGATCCGAATGAAAGATACCGTGAGAAAACGGCTGAGTAGAGGTCTTTCATTCAATAGAGTCTTTCTTCACAAAATATGCAGCCCTTTATGAGACCGTCTGTCATTCAAACTGGTGGCTTTTTCCTATTTCTGGAAGCTGGGTCCTTGCTGGTGGGTATCACTCAGTGCAGCTGCATGgtaagtagggttgcaaaattccagtaactttggCAAAATACCCAGGTTTGACATAAATCCCATTTGGAAAATTCCCAGATTTTCTGATTATTCCACACGGATTCCAGGAAAGTCTTCGTAAACCTGGGAATCATGGGAAAGTTACCATAATTGTGCAACCCTGCTGGAGAAGTGAGGAGAGCTACTGTGCGGGCAGAGGGATGCCCCTGGGGTCTGTGACTTGGCCTTCCTGTAAGTTCTTCACCAGCTGTGCCAACCAGCGTTTGGTGGTGGTGTCGTCTTTCAAGACCTGGGCAAACGTGGTATCTTTAAGCTGGTCTGGTAGACACTGACGGAGGGCCTCTCGGGCTCTGGTGTGGGGGCTGGAGTTGTCTGACAGGCGTAGGTAACAGCGGACAACATGTTTCAAAAGACGAGCAGAGGGCTCTTTGGAGAGCTGAAGA
>TU668636
ctttatttaactaggcaagtcagttaagaacaaattcttatttacaatgacagcctaccagggaacagtgggttaactgccttgttcacgggcagaatgacagacttataccttgtcagctcagggattcgaccgagcaacctttcagttactggcccaaagctctaaccactaggctacctgctttgcCACTGACAGAGAACAAGGCTGTGTTGAGGCCGGAGTTACCTCTACAGTTTAGCACTGAGAACAACTTATTTTTTCTGACCGAGTCTCCACTCAGGTTCCAGAGCATCAATAATACACTGCAGCAGCTCAGGTTTCACATAGATAGACAGGGCCAAGGCTCAAATGGGGGGGGGGTCCCTTATCTGTTAACACTGAAGCACGCCAACACGTTTACCTTGCAGCAACCTCTGTAATATACACAACACAGGAGCAGCTTGATTTCAGTTGATTTTCATTCACTAGCCCATTTGAGATGTGCATATCTATAACACATGCATGTAACCACAAAGCAGTTACTTTGTAATATGTTATTACACAAGAGAAAGTATGTCACATAAACAGTATCGCATACGTCAAGGTGTAACATTTTACTCTGTCGTACACTTCAATCTCAGAACACTTAGTGAAGACTCCAAAATTTCCttgagaaaaaaatatagaaCTAATAGTTTGAGGACAAGTGAAAACGCATCCATATACTGCTGGAGATAGGGCAGACAGTTTGATCCGAATGAAAGATACCGTGAGAAAACGGCTGAGTAGAGGTCTTTCATTCAATAGAGTCTTTCTTCACAAAATATGCAGCCCTTTATGAGACCGTCTGTCATTCAAACTGGTGGCTTTTTCCTATTTCTGGAAGCTGGGTCCTTGCTGGTGGGTATCACTCAGTGCAGCTGCATGgtaagtagggttgcaaaattccagtaactttggCAAAATACCCAGGTTTGACATAAATCCCATTTGGAAAATTCCCAGATTTTCTGATTATTCCACACGGATTCCAGGAAAGTCTTCGTAAACCTGGGAATCATGGGAAAGTTACCATAATTGTGCAACCCTGCTGGAGAAGTGAGGAGAGCTACTGTGCGGGCAGAGGGATGCCCCTGGGGTCTGTGACTTGGCCTTCCTGTAAGTTCTTCACCAGCTGTGCCAACCAGCGTTTGGTGGTGGTGTCGTCTTTCAAGACCTGGGCAAACGTGGTATCTTTAAGCTGGTCTGGTAGACACTGACGGAGGGCCTCTCGGGCTCTGGTGTGGGGGCTGGAGTTGTCTGACAGGCGTAGGTAACAGCGGACAACATGTTTCAAAAGACGAGCAGAGGGCTCTTTGGAGAGCTGAAGA

Function

NR:

description
CCR4-NOT transcription complex subunit 9 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU668639 False 1495 lncRNA 0.45 2 22609961 22611689
TU668636 True 1352 lncRNA 0.45 2 22610104 22611689

Neighbor

gene id symbol gene type direction distance location
LOC110527515 LOC106575209 coding upstream 139439 22460310 ~ 22470522 (+)
LOC118936317 LOC106574274 coding upstream 193811 22385870 ~ 22416150 (+)
c7h10orf53 cssa17h10orf53 coding upstream 249729 22356500 ~ 22360232 (+)
mxra5a LOC106574270 coding upstream 262924 22327571 ~ 22347037 (+)
LOC110527508 LOC106574269 coding upstream 298123 22290515 ~ 22312038 (+)
LOC110528815 ftcd coding downstream 9314 22621003 ~ 22634558 (+)
LOC110527523 stat1-2 coding downstream 72838 22684527 ~ 22722539 (+)
LOC110527535 LOC106575222 coding downstream 581885 23193574 ~ 23221003 (+)
LOC110527536 LOC106575223 coding downstream 615664 23227353 ~ 23230734 (+)
aox6 LOC106575224 coding downstream 660114 23271803 ~ 23289814 (+)
G586148 NA non-coding upstream 83441 22525879 ~ 22526520 (+)
G586086 LOC106574277 non-coding upstream 151784 22455087 ~ 22458177 (+)
G586111 NA non-coding upstream 157400 22452319 ~ 22452561 (+)
G586105 NA non-coding upstream 163696 22445957 ~ 22446265 (+)
G586104 NA non-coding upstream 165773 22443876 ~ 22444188 (+)
G586236 NA non-coding downstream 6254 22617943 ~ 22627272 (+)
G586256 NA non-coding downstream 63785 22675474 ~ 22676432 (+)
G586257 NA non-coding downstream 64808 22676497 ~ 22676707 (+)
G586262 NA non-coding downstream 70003 22681692 ~ 22682232 (+)
G586291 NA non-coding downstream 158012 22769701 ~ 22769988 (+)
G585573 NA other upstream 656692 21953029 ~ 21953269 (+)
G584643 NA other upstream 1527346 21080828 ~ 21082615 (+)
G583605 NA other upstream 2370164 20238911 ~ 20239797 (+)
LOC110528807 LOC106574429 other upstream 2588234 20017855 ~ 20028775 (+)
G586685 NA other downstream 398372 23010061 ~ 23015120 (+)
LOC110527540 LOC106533352 other downstream 999663 23609520 ~ 23621369 (+)
G587660 NA other downstream 1196033 23807722 ~ 23808000 (+)
G588755 NA other downstream 2292642 24904331 ~ 24905581 (+)

Expression


Co-expression Network