G586522


Basic Information

Item Value
gene id G586522
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 22620999 ~ 22624553 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU668978
AGAAAGTTTTCTTACATGACCAATATAAAGCTACCATGTGTGTTGTGTTAATCACACCAGACCACTACTAACGGTTTCCTTCTGCTGTGCCAACAGGTAATCCACTTTCTGTATCTCCCATGCCTACTCACCTTTTTGTTCCGGCCCTCGGAGAAGTTGGGCACACACTCCACCAGCTTAGCCATGATGCGTAATAATCACAGAGTCGGGGCAGCTGGCAGTGATTCCCAGGCTGCTCTAGTCTAATATTTACCAGGACCTGGTGCGGATGGTGCCAGCCTCCCATGCAACATTCACAGACACAAATCCCTGATTCACCATAGGTTAGACTTAAATACTGGAGCACCAGATGCGAAGGGTGAAGGAATAAATCCAGTATGATCAAAGGAAGTATCCAAGCTGACAGACGGATAGCTGGTGAACTCTCCACTCTAGCTGTTACCTCTGCGTTCTCACCACAGCCATAGTAAACACTTGGCTAAGTCCTATTAGATGAGATCTCAGGATCAGAGATGTCAATTTCAATAATTATGATTGAAATGTGAAGTGGTGCACAGATCTAGCCCCACCGCTGCATTACGATATTGCATTCATTGTGTATTCATCTCTTGTATTTATGGTATGCAGAGTTTCTGAACATTTTGGTACCAGTAACACTGTTTCCTAAATAGTACACAAAATATGCACCATCACCAATAGGATTTCTTAAATCTGAATCAAAAAGCTTCATGTTGGTTATTATTAGCTATGGCAGTAGTGACTCTTTTATAGCCTCTGTGAACTTTGATCCAAAGGATTAAAAAGTCTATAATGGTCAAACATACTCAGCAGTCAGCATTGATCTAGGTGATCAAAGCATTACTCAGCTAAGTAGCAGTCAAGCAGGCCAATTCTTATTATCCACATTGACAGGTCAACTAGTTTGTTTTTATACAAGATGTATCCTACTGCTTTGGTTTTGTTACGCTGAAGATGCAACCACTGAGGCTATAGGCTGTGCTATCCAGCCCAGTGTTTCAGAAACCTTTTTCTGTGCTAGGGACTGTGTTCTAGCCAACTGTTGAAGGATTAACTAACATCAATTAATGAACACCTGTCTATGGTTGCATCACATCATCCTCCCCcaaaacaaacaaatacagttggCTGGACTGGTTAATGAGTAATGCTGCAGAGGGGATCTGGATGGATTGAGCTGCTTTTTTAGAACTGGGCACTAAACAGACAAATATTTGAGCATTTATTGGTGCAGTGGAACACTCCTCCTACTACCTGGTCCTATTGGCATACATGAACTTCAATGCCTATGAATAAAAACAGATCATTGT
>TU668977
CTCCTACCTGAGTGTTTGGTCATATCAATGAGTGGGAAGGCAGTGCGTGCAGCGTTCAATGCACCCTCCACCACAGCCTGTGGCGAGCCTACGAAGCTGTAGACTGTACGGTTGGTGGAGGATCCAGGGTCCACGTCGAGTAGACTGCATCCCTCCGTGCTGGAAATGGCCTCTGCGATTGCATCAATCACCTGGAAGTAATCCACTTTCTGTATCTCCCATGCCTACTCACCTTTTTGTTCCGGCCCTCGGAGAAGTTGGGCACACACTCCACCAGCTTAGCCATGATGCGTAATAATCACAGAGTCGGGTAATCCGAGACAAAGAATCAGACCAATTTAAGGCATACGTTTATTCCCCCTTTTTCTCTGCTCCACGAGCACACACCAACCCATCCAGTCTGTCTTTTCATCCCCAAACGGGA

Function

NR:

description
formimidoyltransferase-cyclodeaminase-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU668978 False 1328 lncRNA 0.42 2 22620999 22622509
TU668977 True 424 lncRNA 0.52 2 22622187 22624553

Neighbor

gene id symbol gene type direction distance location
LOC110527522 LOC106575212 coding downstream 751 22609884 ~ 22620248 (-)
plcd4a LOC106575211 coding downstream 11530 22587846 ~ 22609469 (-)
fam207a cu070 coding downstream 33331 22563281 ~ 22587668 (-)
LOC110527519 LOC106575210 coding downstream 105826 22487885 ~ 22515173 (-)
cep70 LOC106575208 coding downstream 142109 22470835 ~ 22478890 (-)
stat1-2 stat1-2 coding upstream 13537 22638090 ~ 22668102 (-)
mstn2a mstn2a coding upstream 53895 22678448 ~ 22679952 (-)
glsa LOC106575215 coding upstream 100726 22725279 ~ 22746080 (-)
LOC110527525 clcc1 coding upstream 123057 22747610 ~ 22768921 (-)
LOC110527526 LOC106575217 coding upstream 163004 22787557 ~ 22792363 (-)
G586488 NA non-coding downstream 15966 22564482 ~ 22605033 (-)
G586398 NA non-coding downstream 77418 22486284 ~ 22543581 (-)
G586414 LOC106574278 non-coding downstream 155558 22463208 ~ 22470518 (-)
G586411 NA non-coding downstream 166175 22454261 ~ 22454824 (-)
G586405 NA non-coding downstream 174818 22445948 ~ 22446181 (-)
G586539 NA non-coding upstream 61012 22685565 ~ 22685824 (-)
G586541 NA non-coding upstream 63146 22687699 ~ 22703875 (-)
G586543 NA non-coding upstream 67128 22691681 ~ 22692118 (-)
G586485 NA non-coding upstream 99317 22723870 ~ 22724435 (-)
G586570 NA non-coding upstream 148854 22773407 ~ 22773606 (-)
LOC110527506 LOC106575199 other downstream 526660 22089741 ~ 22163995 (-)
LOC110527499 LOC106575189 other downstream 1102126 21513832 ~ 21583054 (-)
G585240 LOC106575179 other downstream 1196414 21421454 ~ 21424585 (-)
LOC110527529 ngl1 other upstream 184100 22807676 ~ 22812906 (-)
G586878 NA other upstream 459937 23084490 ~ 23087137 (-)
LOC110527533 s100b other upstream 537341 23161894 ~ 23165209 (-)
G587242 NA other upstream 750459 23375012 ~ 23377701 (-)
G588987 NA other upstream 2203935 24828488 ~ 24828700 (-)

Expression


Co-expression Network