G586579 (ngl1)


Basic Information

Item Value
gene id G586579
gene name ngl1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 22807668 ~ 22808526 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU669040
GGCTAGTGCACATTTCAATTGCGTTGAATTTATTATTTTTCACACCGTTAGTATTGTTCATATTGTATTTTAAAGTATCTAATAGAACACTACAAATTCTGGTATTATTACAAATGCAAAAAGTGTACATATTGAGTAATTGATTAATGCATTTGTGTACAATAAATACTTGGTGAAATTGTACAATAGCCCTTTAAAATATGACGCTTATAACTGTCTCAGATATTTTCTTCGTGTTActgtacaaatgtattaaaaggaTTGTGTTGCCGAGAAAAAGTCAATCCCTAGTGATCTGAGTCAGACAAGTTGCCCTGCTCCGTCCAATGCtttcccctcttcttcttctttctcttcctctccgccATGACGATGGCCCCCAACACTGTTATCATCACGGTGATCGTGATAATCAGCACAATAACCACCTCGGCGATACACAGCTCCGTATCCACATCCATCAACCTGTAGTTCGCTAGTTCTGGCGGAGCATTACAGCTAAGATTATAGTAATCATCCAAGAACAGCCTTTGAACACTTCTAAGCTTGTGGAACACTTTCTGCAGGTCACAATTGCAGTCCCAGGGGTTTCCTTCCAACAGGATATGGGTACTGTAGGTGTGGATGCTTAGGAAGGTCTTGAAGTAGATGGTGCTCATCTGGTTGTGGGCTAGGTTGAGCAAGGCCAGGGAGGTCATGGGTGTGAAGACACCCTCTTGGGTCTTGTTGATCTGGTTCCCCTGCAGGTTGAGGACCTCCAGGGACTTCAGCATGGAGAACACCCCATTGTTCAGGGAGACGAGATGGTTGCCCTCCAGGTGGAGCTGCCGCAAGGTGGACATGGAGCCAAAGGACCTCA

Function

symbol description
ngl1 Predicted to enable endonuclease activity and poly(A)-specific ribonuclease activity. Predicted to be involved in nuclear-transcribed mRNA poly(A) tail shortening. Located in mitochondrion. Orthologous to human CNOT6L (CCR4-NOT transcription complex subunit 6 like).

NR:

description
insulin-like growth factor-binding protein complex acid labile subunit

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU669040 True 859 lncRNA 0.44 1 22807668 22808526

Neighbor

gene id symbol gene type direction distance location
LOC110527523 stat1-2 coding upstream 85129 22684527 ~ 22722539 (+)
LOC110528815 ftcd coding upstream 173110 22621003 ~ 22634558 (+)
LOC110527515 LOC106575209 coding upstream 337146 22460310 ~ 22470522 (+)
LOC118936317 LOC106574274 coding upstream 391518 22385870 ~ 22416150 (+)
c7h10orf53 cssa17h10orf53 coding upstream 447436 22356500 ~ 22360232 (+)
LOC110527535 LOC106575222 coding downstream 385048 23193574 ~ 23221003 (+)
LOC110527536 LOC106575223 coding downstream 418827 23227353 ~ 23230734 (+)
aox6 LOC106575224 coding downstream 463277 23271803 ~ 23289814 (+)
LOC110527538 LOC106575225 coding downstream 498290 23306816 ~ 23317470 (+)
LOC110527540 LOC106533352 coding downstream 800994 23609520 ~ 23621369 (+)
G586299 NA non-coding upstream 11481 22795978 ~ 22796187 (+)
G586297 NA non-coding upstream 19883 22785525 ~ 22787785 (+)
G586291 NA non-coding upstream 37680 22769701 ~ 22769988 (+)
G586262 NA non-coding upstream 125436 22681692 ~ 22682232 (+)
G586257 NA non-coding upstream 130961 22676497 ~ 22676707 (+)
G586633 NA non-coding downstream 100041 22908567 ~ 22908837 (+)
G586635 NA non-coding downstream 101641 22910167 ~ 22910401 (+)
G586639 NA non-coding downstream 107270 22915796 ~ 22915977 (+)
G586678 NA non-coding downstream 190082 22998608 ~ 23000536 (+)
G586700 NA non-coding downstream 233204 23041730 ~ 23041940 (+)
G585573 NA other upstream 854399 21953029 ~ 21953269 (+)
G584643 NA other upstream 1725053 21080828 ~ 21082615 (+)
G583605 NA other upstream 2567871 20238911 ~ 20239797 (+)
G586685 NA other downstream 201535 23010061 ~ 23015120 (+)
G587660 NA other downstream 999196 23807722 ~ 23808000 (+)
G588755 NA other downstream 2095805 24904331 ~ 24905581 (+)
G589734 NA other downstream 2795079 25587088 ~ 25608606 (+)

Expression


Co-expression Network