XLOC_025242 (kri1)


Basic Information

Item Value
gene id XLOC_025242
gene name kri1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 19336286 ~ 19355200 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049851
ACTTTTCAGGACATGTGTTACTCACTCGCGGCAACAAAAGCTGCTTGTTTTTATCACagactccaaaaaaaaaatcgtTCTAAATATATGACAGAAAGGACCGGTTTAATTTCTAACAAGGAGTAAAATGTTAGTAGAAAAACAATCGACGAAAGGAGGCGATAGTTGAACCCTGAACTATATGACGTAGGAGAGGGTCGTAGGTCACGTGCCCATGCCGTACAGCAGAGCAACATGTCCAACGTGAGAGTTTGAATTATCGAGATATTAATCTGATCTCAAATCAGAAGATACCGCACAGTTATACGACAACATGTCGGATCTCAAGATTAACAAGAAGTTTGCAGAGAAGTATGAGAAATATCGCCAGAAAGAGGAACTGCAGAGACTGAAGGACCGTTATGGAGACCAGGAAGAGGAAAATTCATCAAACTCCTCCGAATCTGACTCTGATGACAGTGAAGTggaGCTGGATCCAAAGCTAGACAGAGATTTTTACAGAACTCTCTCGCTTCTGAAGAAAAAGGATCCAAAGATCTATCAGAAAGATGCCAAATTCTACACAGAAGAAACATCTGGGTCAGGCAGCGATGAGCAACCGTCCACTTCGAAACAGTCAGAGAAACCCATGTTCCTTAAGGACTATGAGAGGAAAGTCATCCTGGAGAGAGGAGGAAAATATGAAGACGATGACAGTGCTGATGAAGAAATCTCCGCAAAGATGCAGGAGAGAGCTGCATCTCCCACATACATCCAGGAGCAAAAGGAGATACAGGAAAGTTTGCGCAAGTTTGTTCAAGACAGTGATGATGAGGACAGTGATGGTGACGGACAGTTTTTGACACGGAGGACCAAAACACAAGAGGAAAAAGACAAAGAGGAAGCTGACTATGTGGAATGGCTGAAGGGTCAAACAGAGCTGGATGAGAAAGAAGAACTTAAGGACATGAAATATCTGCGGGACTACTGGAACAATCCTCAGTTAGATGAGAAAGAGTCTTTCCTGCGGGACTTCATGCTCAACAAGGGCTACatggaggaggaggatgaagagagGATCCCCACATATAATGAGCTCATGCAGGATGATGTGGATGATTCTGAGGATGAAGGAGAATCATTTCTGCATAAACAGGAAGACTTTGAGAGGCATTACAACTTCCGCTTTGAGGAGCCTGATGCTGGAAAAGTCAAAACATATCCCCGCAACATTGCAACTTCTGTCCGCAGCAAAGACGACAGGAGAAAGAGGAAGAGAGAAGAGGTTAAAGAAAGGAAGAAGAAGGAGAAGGAACAGAAGCAGCAGCAGTTGAAGGAACTGAAGAACCTAAAGCGAGCAGAGATCATGGATAAACTGAAAAAACTGCAGGAGCTAACTGGAAATGAACAGCTAGCCTTCAATGATGTTGACCTGGACGGAGACTTTGACCCTCAGCAACACGACCAGCTTATGCAGAAGGTCTTTGGTGATGAATACTATGAAGAGAATGAAGAAGAAAAACCACAGTTTGAAGGCGATGAGGAATTTGAAGaaaattggaACTGGGATACATGGGTGGGAAAACAGCAGAATGAGGAAGAGTATGACCACAAGGAAGACTATACTGCGGAGGAACACTACCAGCCCAACTGTGATGATCCTGACTTTATCATGGATGCTGATTACGACCCAAGCCAACAGGCCGTttctaaaaagaaaagaaaaaaagagagagaggagaaGAAAAAGAAGAGCAAAGAGGACGTCCCACTCATGGGAAAGAAGAGGAAAAAGTCCCACTTTGCAGAGATCATCAGCAAAAGCAAGCCTGTCTTTGATCCAAACGAGAAGAGCTTCGAGCAGTACTTGGACGAGTACTATAAACTGGACTTTGAGGACATCATTGATGACCTGCCGTGCAGATTTCGCTACCGAGAAGTGGTAGCCAATGACTTTGGGCTGAGCACTGATGAGATTCTGAATGCAGGTGATAAGGAGTTGAACCGCTGGTGCTCACTAAGGAAGACCTGCATGTACAGgTCAGAAAGGGAGGAACTCTGTGACCTGAAGAACTTCCAGATAAAAGCACGCAATGTCAAGAAGAAACAGCAAGTGTTCGTGTCTTTGTTTAATGAaaaTGATGGTCAGGAGGAGCAAAAGGATACCAAGGGGAAGGTGGGAAAGAAGAGGAGGGATCGTCTAAAGAAAGCCGAGCTCACGGAGAAGAGCGACACCACTGTGACTGAAGAAACAGCTGAACCTCCTCCAGCAGAGCAAGCAGATGTCCAGGACCTCAAAGCGACCATCGCaaatgatgaagaggaggatgaCGAGGAGTTCCTGGTTCCTAAGAAAAAGATGAAGACGGCAGAGACTGTGGTAACCAAGAGGAAAGAGGCAGATGTTGAAAGAACTGAAAAACCCAAAAGACCCAGAAAGAAAATGCGTCGCTCAGGTGGACGGCGGCAGCTGAAGTCCATGACGGTGAAGATGGCCGGTCGAGAATTCAGCAGACAGAGACTACAAGCCTACGGGCTCAATCCAAAGAGACTCCACTTCAGAGAGCTGTACAGACAGAAACGGAAAGAGCGAGAGAAACAGGAAAAGCAGCAGAAGAAGAGCAAACAGTGATGCTGGAAATCAACACCATTTTGATTGAGCTGTTTTTAAGGGACCAGGAACCGCTGAAAATAGGAAATTGCATTATTAACATGTTCATTTCAATCTTGAAAGTTTCTGAATCATTGCTGAAAGCtttctctgtttttcttttttaattaaaagagtTTTTGTGGAA
>TCONS_00049852
CAACGTGAGAGTTTGAATTATCGAGATATTAATCTGATCTCAAATCAGAAGATACCGCACAGTTATACGACAACATGTCGGATCTCAAGATTAACAAGAAGTTTGCAGAGAAGTATGAGAAATATCGCCAGAAAGAGGAACTGCAGAGACTGAAGGACCGTTATGGAGACCAGGAAGAGGAAAATTCATCAAACTCCTCCGAATCTGACTCTGATGACAGTGAAGTggaGCTGGATCCAAAGCTAGACAGAGATTTTTACAGAACTCTCTCGCTTCTGAAGAAAAAGGATCCAAAGATCTATCAGAAAGATGCCAAATTCTACACAGAAGAAACATCTGGGTCAGGCAGCGATGAGCAACCGTCCACTTCGAAACAGTCAGAGAAACCCATGTTCCTTAAGGACTATGAGAGGAAAGTCATCCTGGAGAGAGGAGGAAAATATGAAGACGATGACAGTGCTGATGAAGAAATCTCCGCAAAGATGCAGGAGAGAGCTGCATCTCCCACATACATCCAGGAGCAAAAGGAGATACAGGAAAGTTTGCGCAAGTTTGTTCAAGACAGTGATGATGAGGACAGTGATGGTGACGGACAGTTTTTGACACGGAGGACCAAAACACAAGAGGAAAAAGTGCTGACACTGTAGCTTTCGGCTGGATGGATGTCATATAattgtgtttaataaaactgtatcCAGTGATAGGCCTGTTGTTTATTTCTGCGTTTAAGGACAAAGAGGAAGCTGACTATGTGGAATGGCTGAAGGGTCAAACAGAGCTGGATGAGAAAGAAGAACTTAAGGACATGAAATATCTGCGGGACTACTGGAACAATCCTCAGTTAGATGAGAAAGAGTCTTTCCTGCGGGACTTCATGCTCAACAAGGGCTACatggaggaggaggatgaagagagGATCCCCACATATAATGAGCTCATGCAGGATGATGTGGATGATTCTGAGGATGAAGGAGAATCATTTCTGCATAAACAGGAAGACTTTGAGAGGCATTACAACTTCCGCTTTGAGGAGCCTGATGCTGGAAAAGTCAAAACATATCCCCGCAACATTGCAACTTCTGTCCGCAGCAAAGACGACAGGAGAAAGAGGAAGAGAGAAGAGGTTAAAGAAAGGAAGAAGAAGG
>TCONS_00049853
GGCCAGTATCATGCGTCTCTACACTGTCTGTCATCGGTCGAACATACAGAAAATGTTTCAGCCTACACAAACCCCATTTGTTCCCCTGTTTCCAGACGAGAAGAGCTTCGAGCAGTACTTGGACGAGTACTATAAACTGGACTTTGAGGACATCATTGATGACCTGCCGTGCAGATTTCGCTACCGAGAAGTGGTAGCCAATGACTTTGGGCTGAGCACTGATGAGATTCTGAATGCAGGTGATAAGGAGTTGAACCGCTGGTGCTCACTAAGGAAGACCTGCATGTACAGgTCAGAAAGGGAGGAACTCTGTGACCTGAAGAACTTCCAGATAAAAGCACGCAATGTCAAGAAGAAACAGCAAGTGTTCGTGTCTTTGTTTAATGAaaaTGATGGTCAGGAGGAGCAAAAGGATACCAAGGGGAAGGTGGGAAAGAAGAGGAGGGATCGTCTAAAGAAAGCCGAGCTCACGGAGAAGAGCGACACCACTGTGACTGAAGAAACAGCTGAACCTCCTCCAGCAGAGCAAGCAGATGTCCAGGACCTCAAAGCGACCATCGCaaatgatgaagaggaggatgaCGAGGAGTTCCTGGTTCCTAAGAAAAAGATGAAGACGGCAGAGACTGTGGTAACCAAGAGGAAAGAGGCAGATGTTGAAAGAACTGAAAAACCCAAAAGACCCAGAAAGAAAATGCGTCGCTCAGGTGGACGGCGGCAGCTGAAGTCCATGACGGTGAAGATGGCCGGTCGAGAATTCAGCAGACAGAGACTACAAGCCTACGGG

Function

symbol description
kri1 Acts upstream of or within definitive hemopoiesis and ribosome biogenesis. Predicted to be part of 90S preribosome. Predicted to be active in nucleolus. Is expressed in eye; immature eye; and somite. Orthologous to human KRI1 (KRI1 homolog).

GO:

id name namespace
GO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0060216 definitive hemopoiesis biological_process
GO:0030686 90S preribosome cellular_component
GO:0005730 nucleolus cellular_component

KEGG:

id description
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-040915-3 Acts upstream of or within definitive hemopoiesis and ribosome biogenesis. Predicted to be part of 90S preribosome. Predicted to be active in nucleolus. Is expressed in eye; immature eye; and somite. Orthologous to human KRI1 (KRI1 homolog).

Ensembl:

ensembl_id ENSDARG00000075380

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049851 False 2777 mRNA 0.44 19 19336286 19355200
TCONS_00049852 False 1145 lncRNA 0.44 10 19336525 19341041
TCONS_00049853 True 787 processed_transcript 0.49 4 19349438 19354938

Neighbor

gene id symbol gene type direction distance location
XLOC_025240 ldlra coding upstream 12597 19299309 ~ 19323689 (+)
XLOC_025241 BX322663.3 coding upstream 23179 19312991 ~ 19313107 (+)
XLOC_025239 smarca4a coding upstream 53761 19245804 ~ 19282525 (+)
XLOC_025238 il12rb2l coding upstream 97892 19216567 ~ 19238394 (+)
XLOC_025237 rln3a coding upstream 125649 19207176 ~ 19210637 (+)
XLOC_025244 spc24 coding downstream 669 19355869 ~ 19363981 (+)
XLOC_025245 zgc:123297 coding downstream 91797 19446997 ~ 19457773 (+)
XLOC_025246 pde6ga coding downstream 105791 19460991 ~ 19466015 (+)
XLOC_025247 CU571315.1 coding downstream 113577 19468777 ~ 19477473 (+)
XLOC_025248 NA coding downstream 117763 19472963 ~ 19473197 (+)
XLOC_025429 BX649540.1 misc downstream 10893539 30248739 ~ 30249036 (+)
XLOC_025235 CU151886.1 non-coding upstream 418703 18917461 ~ 18917583 (+)
XLOC_025234 CU151886.2 non-coding upstream 443520 18892650 ~ 18892766 (+)
XLOC_025233 AL772362.1 non-coding upstream 468334 18867835 ~ 18867952 (+)
XLOC_025229 AL772362.2 non-coding upstream 547801 18771528 ~ 18788485 (+)
XLOC_025257 NA non-coding downstream 704478 20059678 ~ 20064732 (+)
XLOC_025259 NA non-coding downstream 843102 20198302 ~ 20198619 (+)
XLOC_025261 NA non-coding downstream 1136002 20491202 ~ 20509513 (+)
XLOC_025262 BX248239.1 non-coding downstream 1324723 20679923 ~ 20680038 (+)

Expression


Co-expression Network