G586843


Basic Information

Item Value
gene id G586843
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 22959662 ~ 22987542 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU669329
gtagagaggagactcagtgacaaagaaaacacccttcaggttggaggtagagaggagactcagtggcataaagaaaacacccttcaggttggaggtagagaggagactcagtgacaaagaaagcacccttcaggttggaggtagagaggcgactcagtgacataaagaaaacacccttcaagttggaggtagaggagactcagtggcataaagaaaacacccttcaggttggaggtagagaggagactcagtgacaaagaaaacacccttcaggttggaggtagagaggagactcagtgacataaagaaaacacccttcaggttggaggtagaggagactcagtggcataaagaaaacacccttcaggttggaggtagagaggagactcagtaacataaagaaaacacccttcaggttggaggtagagaggagactcagtaacataaagaaaacacccttcaggttggaggtagagaggagactcagtaacataaagaaaacacccttcaggttggaggtagaggagactcagtgacaaagaaaacacccttcaggttggaggtagaggagactcagtgacataaagaaaacacccttcaggttggaggtagaggagactcagtgacataaagacaacacccttcaggttggaggtagaggagactcagtgacataaagacaacacccttcaggttggaggtagagaggagacgcagtgacataaagaaaacacccttcaggttggaggtagagaggagcctcagtgacataaagaaaacacccttcaggttggaggtagagaggagactcagtgacataaagaaaacacccttcaggttggaggtagaggagactcagtgacataaagaaaacacccttcaggttggaggtagagaggagactcagtggcataaagaaaacacccttcaggttggaggtagagaggagactcagtgacaaagaaagcacccttcaggttggaggtagagaggagactcagtgacataaagaaaacacccttcaggttggaggtagaggagactcagtggcataaagaaaacacccttcaggttggaggtagagaggagactcagtgacaaagaaaacacccttcaggttggaggtagagaggagactcagtgacataaagaaaacacccttcaggttggaggtagatgagactcagtgacataaagaaaacacccttcgggttggaggtagaggagactcagtgacaaagaaaacacccttcaggttggaggtagaggagactcagtgacataaagaaaacacccttcaggttggaggtagaggagactcagtgacaaagaaaacacccttcaggttgaaggtagagaggagactcagtgacaaagaaaacacccttcaggttggaggtagaggagactcagtgacataaagaaaacacccttcaggttggaggtagagaggagactcagtgacataaagaaaacacccttcaggttggaggtttagaggagactcagtgacataaagaaaacacccttcaggttggaggtagagaggagactcagtgacataacgaaaacacccttcaggttggaggtagaggagactcagtgacataaagaaaacacccttcaggttggaggtagagaggagactcagtgacataaagaaaacacccttcaggttg
>TU669331
caagaaaacacccttcaggttggaggtagaggagactcagtgacataaagacaacacccttcaggttggaggtagagaggagacgcagtgacataaagaaaacacccttcaggttggaggtagagaggagactcagtgacataaagaaaacacccttcaggttggaggtagagaggagactcagtgacataaagaaaacacccttcaggttggaggtagagaggagactcagtgacataaagaaaacacccttcaggttggaggtagaggagactcagtgacaaagaaaacacccttcaggttggaggtagaggagactcagtgacataaagaaaacacccttcaggttggaggtagaggagactcagtgacataaagaaaacacccttcaggttggaggtagaggagactcagtgacataaagacaacacccttcaggttggaggtagagaggagacgcagtgacataaagaacacacccttcaggttggaggtagagaggagactcagtgacataaagaaaacacccttcaggttggaggtagagaggagactcagtgacataaagaaaacacccttcaggttggaggtagagaggagactcagtgacataaagaaaacacccttcaggttggaggtagaggagactcagtgacataaagaaaacacccttcaggttggaggtagagaggagactcagtggcataaagaaaacacccttcaggttggaggtagagaggagactcagtgacaaagaaagcacccttcaggttggaggtagagaggagactcagtgacataaagaaaacacccttcaggttggaggtagaggagactcagtggcataaagaaaacacccttcaggttggaggtagagaggagactcagtgacaaagaaaacacccttcaggttggaggtagagaggagactcagtgacataaagaaaacacccttcaggttggaggtagaggagactcagtggcataaagaaaacacccttcaggttggaggtagagaggagactcagtgacataaagaaaacacccttcaggttggaggtagaggagactcagtgacataaagaaaacacccttcaggttggaggtagaggagactcagtgacaaagaaaacacccttcaggttggaggtagaggagactcagtgacataaagaaaacacccttcaggttggaggtagaggagactcagtgacaaagaaaacacccttcaggttgaaggtagagaggagactcagtgacaaagaaaacacccttcaggttggaggtagaggagactcagtgacataaagaaaacacccttcaggttggaggtagagaggagactcagtgacataaagaaaacacccttcaggttggaggtagagaggagactcagtgacataaagaaaacacccttcaggttggaggtagagaggagactcagtgacataacgaaaacacccttcaggttggaggtagaggagactcagtgacataaagaaaacacccttcaggttggaggtagaggagactcagtgacataaagaaaacacccttcaggttggaggtagagaggagactcagtgacataaagaaaacacccttcaggttg
>TU669332
aggaaactcagtgacataaagaaaacacccttcaggttggaggtagaggagactcagtgacataaagaaaacacccttcaggttggaggtagagaggagacgcagtgacataaagaaaacacccttcaggttggaggtagagtggagactcagtgacataacgaaaacacccttcaggttggaggtagaggagactcagtgacataaagaaaacacccttcaggttggaggtagagaggagactcagtgacataaagaaaacacccttcaggttggaggtagagaggagactcagtgacataaagaaaacacccttcaggttggaggtagagaggagactcagtgacataacgaaaacacccttcaggttggaggtagaggagactcagtgacataaagaaaacacccttcaggttggaggtagaggagactcagtgacataaagaaaacacccttcaggttggaggtagagaggagactcagtgacataaagaaaacacccttcaggttg
>TU669327
tgacataaagaaaacacccttcaggttggaggtagaggagactcagtggcataaagaaaacacccttcaggttggaggtagagaggagactcagtgacataaagaaaacacccttcaggttggaggtagaggagactcagtgacataaagaaaacacccttcaggttggaggtagagaggagactcagtggcataaagaaaacacccttcaggttggaggtagagaggaaactcagtgacataaagaaaacacccttcaggtagagaggaaactcagtgacataaagaaaacacccttcaggttggaggtagagaggagactcagtgacataaagaaaacacccttcaggttggaggtagagaggagactcagtgacataaagaaaacacccttcaggttggaggtagaggagactcagtgacataaagaaaacacccttcaggttggaggtagagaggagactcagtaacataaagaaaacacccttcaggttggaggtagaggagactcagtgacaaagaaaacacccttcaggttggaggtagaggagactcagtgacataaagaaaacacccttcaggttggaggtagaggagactcagtgacataaagacaacacccttcaggttggaggtagaggagactcagtgacataaagacaacacccttcaggttggaggtagagaggagacgcagtgacataaagaaaacacccttcaggttggaggtagagaggagactcagtgacataaagaaaacacccttcaggttggaggtagagaggagactcagtgacataaagaaaacacccttcaggttggaggtagagaggagactcagtgacataaagaaaacacccttcaggttggaggtagagaggagactcagtgacataaagaaaacacccttcaggttggaggtagaggagactcagtgacataaagaaaacacccttcaggttggaggtagagaggagactcagtggcataaagaaaacacccttcaggttggaggtagagaggagactcagtgacaaagaaagcacccttcaggttggaggtagagaggagactc
>TU669330
gtagagaggagactcagtgacaaagaaaacacccttcaggttggaggtagagaggagactcagtggcataaagaaaacacccttcaggttggaggtagagaggagactcagtgacaaagaaagcacccttcaggttggaggtagagaggcgactcagtgacataaagaaaacacccttcaagttggaggtagaggagactcagtggcataaagaaaacacccttcaggttggaggtagagaggagactcagtgacaaagaaaacacccttcaggttggaggtagagaggagactcagtgacataaagaaaacacccttcaggttggaggtagaggagactcagtggcataaagaaaacacccttcaggttggaggtagagaggagactcagtaacataaagaaaacacccttcaggttggaggtagaggagactcagtgacaaagaaaacacccttcaggttggaggtagaggagactcagtgacataaagaaaacacccttcaggttggaggtagaggagactcagtgacataaagaaaacacccttcaggttggaggtagaggagactcagtgacataaagacaacacccttcaggttggaggtagagaggagacgcagtgacataaagaaaacacccttcaggttggaggtagagaggagactcagtgacataaagaaaacacccttcaggttggaggtagaggagactcagtgacataaagaaaacacccttcgggttggaggtagagaggagacgcagtgacataaagaaaacacccttcaggttggaggtagagaggagactcagtgacataacgaaaacacccttcaggttggaggtagagaggagactcagtgacaaagaaaacacccttcaggttggaggtagaggagactcagtgacataaagaaaacacccttcaggttggaggtagaggagactcagtgacataaagaaaacacccttcaggttggaggtagaggagactcagtgacataaagacaacacccttcaggttggaggtagagaggagacgcagtgacataaagaaaacacccttcaggttggaggtagagaggagactcagtgacataaagaaaacacccttcaggttggaggtagagaggagactcagtgacataaagaaaacacccttcaggttggaggtagagaggagactcagtgacataaagaaaacacccttcaggttggaggtagagaggagactcagtgacataaagaaaacacccttcaggttggaggtagaggagactcagtgacataaagaaaacacccttcaggttggaggtagagaggagactcagtggcataaagaaaacacccttcaggttggaggtagagaggagactcagtgacaaagaaagcacccttcaggttggaggtagagaggagactc
>TU669333
gtagagaggagactcagtgacaaagaaaacacccttcaggttggaggtagagaggagactcagtggcataaagaaaacacccttcaggttggaggtagagaggagactcagtgacaaagaaagcacccttcaggttggaggtagagaggcgactcagtgacataaagaaaacacccttcaagttggaggtagaggagactcagtggcataaagaaaacacccttcaggttggaggtagagaggagactcagtgacaaagaaaacacccttcaggttggaggtagagaggagactcagtgacataaagaaaacacccttcaggttggaggtagaggagactcagtggcataaagaaaacacccttcaggttggaggtagagaggagactcagtaacataaagaaaacacccttcaggttggaggtagaggagactcagtgacaaagaaaacacccttcaggttggaggtagaggagactcagtgacataaagaaaacacccttcaggttggaggtagaggagactcagtgacataaagaaaacacccttcaggttggaggtagaggagactcagtgacataaagacaacacccttcaggttggaggtagagaggagacgcagtgacataaagaaaacacccttcaggttggaggtagagaggagactcagtgacataaagaaaacacccttcag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU669329 False 1679 lncRNA 0.47 5 22959662 22987542
TU669331 False 1612 lncRNA 0.47 3 22959662 22968575
TU669332 False 511 lncRNA 0.46 3 22959662 22970100
TU669327 False 1075 lncRNA 0.46 2 22976588 22977809
TU669330 False 1421 lncRNA 0.47 3 22976588 22987542
TU669333 True 693 lncRNA 0.47 2 22979814 22987542

Neighbor

gene id symbol gene type direction distance location
ahr1b ahr1b coding downstream 51524 22832299 ~ 22908138 (-)
LOC110527529 ngl1 coding downstream 146756 22807676 ~ 22812906 (-)
LOC110527527 LOC106575218 coding downstream 152165 22797924 ~ 22807497 (-)
LOC110527526 LOC106575217 coding downstream 167299 22787557 ~ 22792363 (-)
LOC110527525 clcc1 coding downstream 190741 22747610 ~ 22768921 (-)
LOC118965270 NA coding upstream 60489 23048031 ~ 23053093 (-)
LOC118965271 NA coding upstream 78447 23065989 ~ 23098610 (-)
LOC110527532 LOC106575221 coding upstream 119100 23106642 ~ 23133644 (-)
LOC110527533 s100b coding upstream 175048 23161894 ~ 23165209 (-)
LOC110527539 LOC106575227 coding upstream 330047 23317589 ~ 23320557 (-)
G586844 NA non-coding downstream 994 22953342 ~ 22958668 (-)
G586590 NA non-coding downstream 139880 22819543 ~ 22819782 (-)
G586577 NA non-coding downstream 164736 22794682 ~ 22794926 (-)
G586845 NA non-coding upstream 4880 22992422 ~ 22994686 (-)
G586872 NA non-coding upstream 74637 23062179 ~ 23062671 (-)
G586876 NA non-coding upstream 85001 23072543 ~ 23082380 (-)
G586877 NA non-coding upstream 85807 23073349 ~ 23083164 (-)
G586890 NA non-coding upstream 116635 23104177 ~ 23104473 (-)
LOC110527522 LOC106575212 other downstream 339546 22609884 ~ 22620248 (-)
G586414 LOC106574278 other downstream 489144 22463208 ~ 22470518 (-)
LOC110527506 LOC106575199 other downstream 865323 22089741 ~ 22163995 (-)
LOC110527499 LOC106575189 other downstream 1440789 21513832 ~ 21583054 (-)
G586878 NA other upstream 96948 23084490 ~ 23087137 (-)
G587242 NA other upstream 387470 23375012 ~ 23377701 (-)
G588987 NA other upstream 1840946 24828488 ~ 24828700 (-)
G589093 NA other upstream 1984071 24971613 ~ 24979107 (-)

Expression


Co-expression Network