Fish Transcriptome and Expression Database

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model fish

XLOC_025243 (BX322663.1)

Basic Information

Item	Value
gene id	XLOC_025243
gene name	BX322663.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007114.7
NCBI id	CM002887.2
chromosome length	62628489
location	19349719 ~ 19349817 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049854
CTGTGCTGATGAGCTGTGATTGTGTCTGACCTGGTATTGCTGTTCCTCCGGGAGTAACTCTGACCAGGGTCTGAAGACTGTAATCTTCTCTCTGAGCAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000081972

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00049854	True	99	snoRNA	0.51	1	19349719	19349817

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_025240	ldlra	coding	upstream	26030	19299309 ~ 19323689 (+)
XLOC_025241	BX322663.3	coding	upstream	36612	19312991 ~ 19313107 (+)
XLOC_025239	smarca4a	coding	upstream	67194	19245804 ~ 19282525 (+)
XLOC_025238	il12rb2l	coding	upstream	111325	19216567 ~ 19238394 (+)
XLOC_025237	rln3a	coding	upstream	139082	19207176 ~ 19210637 (+)
XLOC_025244	spc24	coding	downstream	6052	19355869 ~ 19363981 (+)
XLOC_025245	zgc:123297	coding	downstream	97180	19446997 ~ 19457773 (+)
XLOC_025246	pde6ga	coding	downstream	111174	19460991 ~ 19466015 (+)
XLOC_025247	CU571315.1	coding	downstream	118960	19468777 ~ 19477473 (+)
XLOC_025248	NA	coding	downstream	123146	19472963 ~ 19473197 (+)
XLOC_025429	BX649540.1	misc	downstream	10898922	30248739 ~ 30249036 (+)
XLOC_025235	CU151886.1	non-coding	upstream	432136	18917461 ~ 18917583 (+)
XLOC_025234	CU151886.2	non-coding	upstream	456953	18892650 ~ 18892766 (+)
XLOC_025233	AL772362.1	non-coding	upstream	481767	18867835 ~ 18867952 (+)
XLOC_025229	AL772362.2	non-coding	upstream	561234	18771528 ~ 18788485 (+)
XLOC_025257	NA	non-coding	downstream	709861	20059678 ~ 20064732 (+)
XLOC_025259	NA	non-coding	downstream	848485	20198302 ~ 20198619 (+)
XLOC_025261	NA	non-coding	downstream	1141385	20491202 ~ 20509513 (+)
XLOC_025262	BX248239.1	non-coding	downstream	1330106	20679923 ~ 20680038 (+)

Expression

Co-expression Network