G586877


Basic Information

Item Value
gene id G586877
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 23073349 ~ 23083164 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU669374
ctggcttttttatggcggttttggagcagtggcttcttccttgctcagtggcctttcaggttatgtcgatataggacttgttttactgtggatatagatacttttgtgcttgtttcctccagcatcttcacagggtcctttgttgttgttctggattgatttgcacttttcgcaccaaagtacgttcatctctaggagacagaatgcgtctccttccggagcgttatgacagctgcgtgataccatggtgtttatacttgcgtactattgtttgtacagatgaatgtggtaccttcaggcgtttggacatTTCTCCTAAGGAGgaaccagacgtgtggaggtcttcaatgttttttctgaggtcttggctgatttcttttgattttcccatgatttcaattTAAGAGACACTgcgtttgaagataggccttgaaatacatccccaggtacacctccaattgactcatatgatgttaattagcctatcataagCATCTGAAGCCATGtcgacattttctggaattttccaagctagcACATTCTGAATGGCTATTCAGTGGCCAAGCCTTgacacacccacaacttgtttattcataTAAACCCAGGCCTTTCCCGCTACCGCCAGCAATTGCGCCCATAATTGTGGTTGTGAAAATAGCTCAAACATTTCTGCCCCCTC
>TU669375
ctggcttttttatggcggttttggagcagtggcttcttccttgctcagtggcctttcaggttatgtcgatataggacttgttttactgtggatatagatacttttgtgcttgtttcctccagcatcttcacagggtcctttgttgttgttctggattgatttgcacttttcgcaccaaagtacgttcatctctaggagacagaatgcgtctccttccggagcgttatgacagctgcgtgataccatggtgtttatacttgcgtactattgtttgtacagatgaatgtggtaccttcaggcgtttggacatTTCTCCTAAGGAGgaaccagacgtgtggaggtcttcaatgttttttctgaggtcttggctgatttcttttgattttcccatgatttcaattTAAGAGACACTgcgtttgaagataggccttgaaatacatccccaggtacacctccaattgactcatatgatgttaattagcctatcataagCATCTGAAGC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU669374 False 679 lncRNA 0.43 2 23073349 23083164
TU669375 True 502 lncRNA 0.43 2 23073526 23083164

Neighbor

gene id symbol gene type direction distance location
LOC118965270 NA coding downstream 20256 23048031 ~ 23053093 (-)
ahr2 ahr2g coding downstream 37375 22915782 ~ 23035974 (-)
ahr1b ahr1b coding downstream 165211 22832299 ~ 22908138 (-)
LOC110527529 ngl1 coding downstream 260443 22807676 ~ 22812906 (-)
LOC110527527 LOC106575218 coding downstream 265852 22797924 ~ 22807497 (-)
LOC110527532 LOC106575221 coding upstream 23478 23106642 ~ 23133644 (-)
LOC110527533 s100b coding upstream 79426 23161894 ~ 23165209 (-)
LOC110527539 LOC106575227 coding upstream 234425 23317589 ~ 23320557 (-)
LOC118965272 NA coding upstream 243882 23327046 ~ 23329616 (-)
LOC110528816 LOC106575230 coding upstream 309958 23392907 ~ 23552928 (-)
G586872 NA non-coding downstream 10678 23062179 ~ 23062671 (-)
G586845 NA non-coding downstream 78663 22992422 ~ 22994686 (-)
G586843 NA non-coding downstream 85807 22959662 ~ 22987542 (-)
G586844 NA non-coding downstream 114681 22953342 ~ 22958668 (-)
G586590 NA non-coding downstream 253567 22819543 ~ 22819782 (-)
G586890 NA non-coding upstream 21013 23104177 ~ 23104473 (-)
G586908 NA non-coding upstream 61817 23144981 ~ 23145245 (-)
G587004 NA non-coding upstream 159166 23242330 ~ 23242569 (-)
G587174 NA non-coding upstream 166793 23249957 ~ 23250214 (-)
G587186 NA non-coding upstream 183428 23266592 ~ 23266797 (-)
LOC110527522 LOC106575212 other downstream 453233 22609884 ~ 22620248 (-)
G586414 LOC106574278 other downstream 602831 22463208 ~ 22470518 (-)
LOC110527506 LOC106575199 other downstream 979010 22089741 ~ 22163995 (-)
LOC110527499 LOC106575189 other downstream 1554476 21513832 ~ 21583054 (-)
G586878 NA other upstream 1326 23084490 ~ 23087137 (-)
G587242 NA other upstream 291848 23375012 ~ 23377701 (-)
G588987 NA other upstream 1745324 24828488 ~ 24828700 (-)
G589093 NA other upstream 1888449 24971613 ~ 24979107 (-)

Expression


Co-expression Network