XLOC_025244 (spc24)


Basic Information

Item Value
gene id XLOC_025244
gene name spc24
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 19355869 ~ 19363981 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049855
GATTCGCTAACTGCTGAATAAACGAGAAGAACAAGGAACACCCGCCAGTTTGAAATCGGGATTTCGGCGTTCAGTCTGGaaatatcaCTAATGCAGAGATGTCCCATAGCATTTCGATGCATGATGATGACCTTGAGAAATTAGGAGAATCTTTGAATGAGATCATCATGAGCAGTAAGGCAGAAAGTGTTCTTCAAGCAGCAAGGAAAAAAAAGCAGGAGTTCTTCGACCACTACATCAAGACTAAGAAGACGCTTACTGAGCTCCTAAATGATCTTGTGCACACAGAAGAGGTGGTCGGCCAGAAGCTTCTGGATTTAGACCAACAGAAAAGCCAGATGATGCAGGAGATCATGAAGATGGAGCAGGAGGTGCAGAGGAGCCAGTCTAAAAGTCAAAACCTGGACTCAGAGCTGGAATTCTTGCAGAAAGAGCTGGAAAGACTCCGAGATGCTGAGCAAGAAATCCAAACCCTGCAACAGGAAGTGGATGAGGACACAACTGAGGTCATTCCTTCAGCCATATATGTTGCTCAGCTCTACTCTAAAGTGACCAAGATAAAGCTGGAGTTTGACACAGAGCCGCACATACTGAAAGGAGTTCACTATGGTGCGGATGTGGTGACCCCCATCAACATAGACACCTCCACCCGTACACCCTGTGAGGTCAGCGATGAGCTCTGGAGCCTGGTTAAGACAGAATGGTAGACCTGCTGCATGTGAACAGCGTTAGCTTGTTTACTGTttgatatatatgtgtgtgtgcgtgtattttTTGTATGTGCAGGTCTGTTAGTAAATATTTCTCATTTTCGCCACAAGATGTCACTGCCTCACAAATTCCCCAAGCTGATTGACAATGCACAGTGCGTTAACAAAATAGAAATGTGAACCTCTTTATTTAGAAACACATTTTATTGTTAAGCCTTCAGATTTCCACAGAGCAGTGAATCTGATCCTATCAAATTTAGgatcttgtttttttaaagaggacATTTAGATCACTGAAGTATGGTTtttgtaaatgacaaaaaatgattttcaagAGTTAGCATATATGGCTTGTATCTTGCattcatttaaacttgttttttttttgtttgtttttatttcagtgtttttgtaAATAGGTACTTTTTTGCAACTTATACTcctttctaaaataacattttcgtctaaattgt
>TCONS_00049856
CGGCGTTCAGTCTGGaaatatcaCTAATGCAGAGATGTCCCATAGCATTTCGATGCATGATGATGACCTTGAGAAATTAGGAGAATCTTTGAATGAGATCATCATGAGCAGTAAGGCAGAAAGTGTTCTTCAAGCAGCAAGGAAAAAAAAGCAGGAGTTCTTCGACCACTACATCAAGACTAAGAAGACGCTTACTGAGCTCCTAAATGATCTTGTGCACACAGAAGAGGTGGTCGGCCAGAAGCTTCTGGATTTAGACCAACAGAAAAGCCAGATGATGCAGGAGATCATGAAGATGGAGCAGGAGGTGCAGAGGAGCCAGTCTAAAAGTCAAAACCTGGACTCAGAGCTGGAGTATCCTTCAGTAGCATTTTTTCCTCAAACTTAAATAATCTTTTTGTATAACTGCCTGCCATATTTAACTAAATTGCTGTAGTGCTAAAAAACTGGAAATAAATTGGTGTAATGGCACAAATGTTTATTTGTGCTTAACCATAACAACCTAGTACACTTCTAATTtggaattttttatattttgcggTTCCCTCTTCCACTATTCCATtagaatatataattataattctgAGAATATACAATGTataactataattaaaaaaaattatcattggAACAGACAATTAATGTTTTTTAGTGTGAATTTTTAATTGTATGTTAAATGGTGAATTTGAATGTAGAACATGTTTGAATGTAgaacatacaatatatatatatatatatatatatatatatatatatatatatatatatatata

Function

symbol description
spc24 Predicted to act upstream of or within cell division. Predicted to be located in kinetochore and nucleus. Predicted to be part of Ndc80 complex. Orthologous to human SPC24 (SPC24 component of NDC80 kinetochore complex).

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process
GO:0000775 chromosome, centromeric region cellular_component
GO:0000776 kinetochore cellular_component
GO:0000777 condensed chromosome kinetochore cellular_component
GO:0031262 Ndc80 complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005694 chromosome cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-050522-456 Predicted to act upstream of or within cell division. Predicted to be located in kinetochore and nucleus. Predicted to be part of Ndc80 complex. Orthologous to human SPC24 (SPC24 component of NDC80 kinetochore complex).

Ensembl:

ensembl_id ENSDARG00000093622

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049855 False 1183 mRNA 0.41 6 19355869 19363981
TCONS_00049856 True 773 lncRNA 0.33 3 19355933 19360577

Neighbor

gene id symbol gene type direction distance location
XLOC_025242 kri1 coding upstream 669 19336286 ~ 19355200 (+)
XLOC_025243 BX322663.1 coding upstream 6052 19349719 ~ 19349817 (+)
XLOC_025240 ldlra coding upstream 32180 19299309 ~ 19323689 (+)
XLOC_025241 BX322663.3 coding upstream 42762 19312991 ~ 19313107 (+)
XLOC_025239 smarca4a coding upstream 73344 19245804 ~ 19282525 (+)
XLOC_025245 zgc:123297 coding downstream 83016 19446997 ~ 19457773 (+)
XLOC_025246 pde6ga coding downstream 97010 19460991 ~ 19466015 (+)
XLOC_025247 CU571315.1 coding downstream 104796 19468777 ~ 19477473 (+)
XLOC_025248 NA coding downstream 108982 19472963 ~ 19473197 (+)
XLOC_025249 rprml coding downstream 245657 19609638 ~ 19610990 (+)
XLOC_025429 BX649540.1 misc downstream 10884758 30248739 ~ 30249036 (+)
XLOC_025235 CU151886.1 non-coding upstream 438286 18917461 ~ 18917583 (+)
XLOC_025234 CU151886.2 non-coding upstream 463103 18892650 ~ 18892766 (+)
XLOC_025233 AL772362.1 non-coding upstream 487917 18867835 ~ 18867952 (+)
XLOC_025257 NA non-coding downstream 695697 20059678 ~ 20064732 (+)
XLOC_025259 NA non-coding downstream 834321 20198302 ~ 20198619 (+)
XLOC_025261 NA non-coding downstream 1127221 20491202 ~ 20509513 (+)
XLOC_025262 BX248239.1 non-coding downstream 1315942 20679923 ~ 20680038 (+)

Expression


Co-expression Network