XLOC_025245 (zgc:123297)


Basic Information

Item Value
gene id XLOC_025245
gene name zgc:123297
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 19446997 ~ 19457773 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049857
ACCAGAAATGATTTCAGTCTCTTTTGAACATCTTATATATGCACACTCCTAAATAAGCGTCAGTGTTGAGTTGAAGGCAAGAAATATTGGCTGTAAGAAGTTTAAATAAAAAGtacCTGTGCTCTTTAAACATgaagtttatttgtttgctgcTGCTAACTGCTTGTGGAATTAAAGATTCAAGATCAGaGCAGTATGATGTCATTGGAGCTGCAGTAGCTGTATTTGCTTCAGTCGGAGATGACGTGATTCTGCCCTGTTCAGTCAAACCCAACATCAGTGTTGTGGACATGATAGTGGAGTGGCGGAGATCTGATCTGAAAGACTCTCTGGTGCATCTGTATGAGGATCATGAAGACAGAGAAACAGAGCAGAACGAGTCCTACAGAGGGAGAACACAGCTGATTCATCCAGAGCTTCAGAGAGGAAACGCATCCCTCAGACTTTCATCAGTCAAAGTGTCTGATGAAGGACGTTATAAGTGTATTATTGGGTCTGAATCCTCGAAGCATGAAGCCACAGTCGATCTTACAGTTGAAGCTTTAGGATGGGCTCCGGTGATCACCATAGATGGATTTAATCCTTCAGGAGGGCTTCATCTTCAGTGTGAATCTGAAGGTTGGTATCCTGAACCGCATCTGGAGTGGCTGGATCATGAAGGAGTCAGTTTGAGGCCAGAAACTACAGAGACGCACCAGAAAGCGGGCATGTTCAGCATCAAACACACAATCATTGTTTATCACAGCGACGACAAGATTCACTGCAGAGTGAAACTGAAGCATCACATGCTGGAAGCACAGATCATCACCTCACGTGAAGTGTTTAAAATATGGAGGACAACAGCCGTCCTGATTTCAGTTATAGTTGTGTTCAGTGGTTTTGCTGCAATGATGTTTGCTGTGCTTCTGCATAAATACAGAGaaaacagtCAACTAAAGATTGAGAATAAGAGACTAAAACAAgAACTTGATCAACTTTTACAAAGTCAGAAGACACCAGAAGTGACTCTTGATGCTGGGGATTCAGGTAAAACATGTCACACTGGACCTGAAGATAAAGAAATTCTTGTTGACAACGCAGATCcataaaaagataaaaatgaaGACAAATCGCAAAATGACAAATCTGATGACGGATGAATTTATAAGGGAGGTCTGTTTGGCAGGATGTATTTTCCCCCCAGTGTAGGAAAAAGACAACTGTAATAGTTTATTCCTGTAttatttgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttaaatatatatgttgaagtcagaattattgtcctcctttgattttgtttctttttttttttttttaactatttcccaaatgatgtttaacagaacaaggaaattttcacagtcttgtggagagagtcttatttgttttatttcagctagaataaaagcagt

Function

symbol description
zgc:123297 Predicted to enable signaling receptor binding activity. Predicted to be involved in T cell receptor signaling pathway and regulation of cytokine production. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane.

GO:

id name namespace
GO:0001817 regulation of cytokine production biological_process
GO:0050776 regulation of immune response biological_process
GO:0050852 T cell receptor signaling pathway biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005102 signaling receptor binding molecular_function
GO:0070008 serine-type exopeptidase activity molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-051127-9 Predicted to enable signaling receptor binding activity. Predicted to be involved in T cell receptor signaling pathway and regulation of cytokine production. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane.

Ensembl:

ensembl_id ENSDARG00000056798

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049857 True 1496 mRNA 0.40 8 19446997 19457773

Neighbor

gene id symbol gene type direction distance location
XLOC_025244 spc24 coding upstream 83016 19355869 ~ 19363981 (+)
XLOC_025242 kri1 coding upstream 91797 19336286 ~ 19355200 (+)
XLOC_025243 BX322663.1 coding upstream 97180 19349719 ~ 19349817 (+)
XLOC_025240 ldlra coding upstream 123308 19299309 ~ 19323689 (+)
XLOC_025241 BX322663.3 coding upstream 133890 19312991 ~ 19313107 (+)
XLOC_025246 pde6ga coding downstream 3218 19460991 ~ 19466015 (+)
XLOC_025247 CU571315.1 coding downstream 11004 19468777 ~ 19477473 (+)
XLOC_025248 NA coding downstream 15190 19472963 ~ 19473197 (+)
XLOC_025249 rprml coding downstream 151865 19609638 ~ 19610990 (+)
XLOC_025250 itgb3a coding downstream 163261 19621034 ~ 19649535 (+)
XLOC_025429 BX649540.1 misc downstream 10790966 30248739 ~ 30249036 (+)
XLOC_025235 CU151886.1 non-coding upstream 529414 18917461 ~ 18917583 (+)
XLOC_025234 CU151886.2 non-coding upstream 554231 18892650 ~ 18892766 (+)
XLOC_025233 AL772362.1 non-coding upstream 579045 18867835 ~ 18867952 (+)
XLOC_025257 NA non-coding downstream 601905 20059678 ~ 20064732 (+)
XLOC_025259 NA non-coding downstream 740529 20198302 ~ 20198619 (+)
XLOC_025261 NA non-coding downstream 1033429 20491202 ~ 20509513 (+)
XLOC_025262 BX248239.1 non-coding downstream 1222150 20679923 ~ 20680038 (+)

Expression


Co-expression Network