G587847


Basic Information

Item Value
gene id G587847
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 23940158 ~ 23941432 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU670471
aagCTAACAGCAGGTTGATAGGATAATACCCGTCATCTGTTGCCAAGGATAATTCCTATTGCACCTTGCGCCTGGTCGCTCCCTTTACTTCATTTCTCCTGACTGCCATGTCAAGTCCGCTACCGCTGTTTTGTCTGTTCGTCTGACTGGGGTTGTAACACTCAGTGGGACAATACATCGACTAGGGAGAGAAGGTGGAAGGTCTTCGAGGTGTTTTTGTCCGGCCAGGTCTCCCTGTTTGAATAATCTCTTCCACAATAATCTAACTCCCCTCTTTTTTCTACTGTTAATTTATTCATCCAGATTTTCTTCTTCCCTGTCAACCTATAAACACATCCCTAATCTAAATCTGTCCAATGGCCTTAGAAGTGTAAATGAGTAAAATGAGTAACAGAATCAATactgaaaaaaatatagaaatataaaatataagtGCAACATTGAACAATTTCAttaattttactgagttacagtttatatgaggaaatcagttaattgaaataaattcattaggccctaatctatggatttcacatgactgggaatacagatatgcatatgttggtcacagataccccccaaaaatgggctaatgctcacccacacaacgccatactcATCGTCTgtgattgtgaggccggttggacgaaCTGACAaaatctctaaaacgacgttggaagcggtttatggtagagaaattaacattcaattctctggcaacagctctggtgtacattccttgagacatctgtggcattgtgttgtatgacaaaactgtacatgttagagtggtcttttattgtccccagcacaaggtgcacccgtgtaatgatcatgctgtttaatcaggttcttgatatgccacacctgtcaggtggatggattaacttggcaaaggagaaatgcccactaacagggaagtaaactaatttgtgcacaacatgtGAGAGAAAAAGCTTTTTTGTGCGTAAGGAAGATTTTGGGGAtctttttttttcagctcatgaaacatgggaccaatactttacgtgtcgcgtttatatttttgttcagtgtagttcacTAATCCCAGGAAAATCAGATTGATTAATCTCTCTGCTCTGGAAATTAAACCCAGCTGAATTAGGAATATAGAGACAGGTTGAGGTGGGATTACAGATGACAGATTTCCCCAGATTGGGAATATATGCTCAGTCATTCCCGTTCACACTCAAACAACCATACTGTATGGATCTACACAAACAGACACAATAATAAAGACATACATGAATAAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU670471 True 1275 lncRNA 0.40 1 23940158 23941432

Neighbor

gene id symbol gene type direction distance location
LOC110527540 LOC106533352 coding upstream 319107 23609520 ~ 23621369 (+)
LOC110527538 LOC106575225 coding upstream 622688 23306816 ~ 23317470 (+)
aox6 LOC106575224 coding upstream 650344 23271803 ~ 23289814 (+)
LOC110527536 LOC106575223 coding upstream 709424 23227353 ~ 23230734 (+)
LOC110527535 LOC106575222 coding upstream 719155 23193574 ~ 23221003 (+)
LOC110527542 LOC106574301 coding downstream 368406 24309838 ~ 24352001 (+)
LOC110527543 LOC106575235 coding downstream 417236 24358668 ~ 24426341 (+)
gja5b LOC106574307 coding downstream 631974 24573406 ~ 24583614 (+)
setd4 setd4 coding downstream 782194 24723626 ~ 24732898 (+)
itsn1 LOC100286499 coding downstream 796765 24738197 ~ 24800444 (+)
G587758 LOC106575232 non-coding upstream 7841 23876970 ~ 23932317 (+)
G587670 NA non-coding upstream 116809 23823127 ~ 23823349 (+)
G587667 NA non-coding upstream 119574 23820251 ~ 23820584 (+)
G587666 NA non-coding upstream 120272 23819601 ~ 23819886 (+)
G587665 NA non-coding upstream 121083 23818853 ~ 23819075 (+)
G587876 NA non-coding downstream 30321 23971753 ~ 23972009 (+)
G588051 NA non-coding downstream 168777 24110209 ~ 24110455 (+)
G588080 NA non-coding downstream 188969 24130401 ~ 24130714 (+)
G588115 NA non-coding downstream 238813 24180245 ~ 24274796 (+)
G588263 NA non-coding downstream 337511 24278943 ~ 24279336 (+)
G587660 NA other upstream 132158 23807722 ~ 23808000 (+)
G586685 NA other upstream 925038 23010061 ~ 23015120 (+)
LOC110527523 stat1-2 other upstream 1236337 22684527 ~ 22722539 (+)
c7h10orf53 cssa17h10orf53 other upstream 1579931 22356500 ~ 22360232 (+)
G588755 NA other downstream 962899 24904331 ~ 24905581 (+)
G589734 NA other downstream 1662173 25587088 ~ 25608606 (+)
G589933 NA other downstream 2062498 26003930 ~ 26025309 (+)
G590936 gart other downstream 2611122 26552554 ~ 26553542 (+)
G590949 LOC106575121 other downstream 2635975 26577407 ~ 26577933 (+)

Expression


Co-expression Network